Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq53 176 7e-39 >seq53 Length=159929 Score = 176 bits (194), Expect = 7e-39 Identities = 457/681 (67%), Gaps = 12/681 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || |||||| |||||||| |||| | || | |||| ||||| | | ||| ||||||||| Sbjct 97736 CTGGTCCACAGTGAACTGGATGG-GCGCAGCAGCAG-CCTGCGTACGCAGGTAGTACATG 97793 Query 203897 CCGGTCTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 || ||||| || ||| || ||| |||| | | ||||||| | | |||| || | | Sbjct 97794 CCCGTCTTGAGACCCAGCTTCCAGCCCGCAAA-GTGCATGCTGGTAATCTTGCCCATGGT 97852 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGC 204015 ||||| |||||| ||||| || ||||| ||||| ||||| | | || || || Sbjct 97853 AGGGTCCTTCATGTGGATGTTGAGCGACTGCGACTGGTCAATGAACGCTCCGCGGTCGGC 97912 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGG 204074 ||||| | | || || ||||||||||||||||||||||||| ||| | ||| || Sbjct 97913 AGCCATCTGCACAACCGTGCGCTGCGAAATCTCCCACACCGTCTTGTACAGCATCT-TGA 97971 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 ||| | || | || | || ||| ||||| ||||| || || || | | || Sbjct 97972 TGTCATCGGGGATG-CTGGGAATGTTCTGGATCGACCCGTTCTCCGCAATGATGCGGTTC 98030 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | ||| ||||| |||| | || || |||| ||| ||||||| Sbjct 98031 TTCATGTTATCCGACCACAGACCCAGGTCCACCAAGTCGCGCAGCAGCCACGGGTTGACA 98090 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | ||| || || || | |||||| | || | | | |||| || | || ||||| Sbjct 98091 ACCTGGAACTCGCCAGCCAGCACACGGCGCTGGTAAATGTTGGAAGTATACGGCTCGAAG 98150 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 |||||||||||| | |||||| | ||||||||||| ||||| || || || ||||| Sbjct 98151 CACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGCAGC 98210 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGCGC-TTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||||||||||| | | | || | ||| | || || || | |||||| | | Sbjct 98211 GAGTTGCGCACACCATGCTGCTTGATC-TGCTCCTTGAGCGATGCCCAGTCCCAGAGGTC 98269 Query 204373 ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTT 204432 ||||| | ||| ||||||||| ||||| | ||||| || || || ||||| Sbjct 98270 GCTGGGCGTGACGTTCCACATGTCAAACTGCAGAATGCCCTGGGAAACAGGCGAGCCCTC 98329 Query 204433 GTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATA 204492 |||||| | || | ||||| | || | || ||| || | || || | Sbjct 98330 GTACGTAGAGTACGTTCCCTCCTCCTGCGCAATCTCCATCGACGCCGTCAGAGCAGCGTG 98389 Query 204493 GTACATGGTCTCAAAGATCTG 204513 ||| |||||||||||||| || Sbjct 98390 GTAGATGGTCTCAAAGATTTG 98410 Score = 138 bits (152), Expect = 2e-27 Identities = 459/694 (66%), Gaps = 25/694 (4%) Strand=Plus/Plus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | || |||||| ||||||||| ||| ||||||||||| ||||||||| | Sbjct 98739 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTG 98798 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTC 205042 || |||| |||| | ||||||| | ||||| | | |||| | | | | Sbjct 98799 CCAGTCTCGGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGA-TCGAGGC 98857 Query 205043 ACGTACAT--CCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACA 205100 ||| | |||| | |||||| ||| |||||||||| |||| || ||||| Sbjct 98858 ACGACCGCGGCCCTCCTG-CTCGTACTTTTCGTACAGCGCCTCAAACTCCTCGCCGTAGC 98916 Query 205101 CGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCA--CATCTGATCGTCTTT 205158 ||| ||| || || || | ||||| |||||||||| ||| || | | || ||| Sbjct 98917 AGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCAGC-GTTCTTCTCG 98975 Query 205159 CACCCTCTCCATAAACAGGTCGCTGATCCACAG-GCCGTAAAACAGATCACGGGCCCTAA 205217 || | || ||| |||||||| ||||||||| ||| ||| ||||||||||| | || Sbjct 98976 -ACACGCTTCATGAACAGGTCAGGGATCCACAGAGCCAGGAAA-AGATCACGGGCGCGAA 99033 Query 205218 TTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACG 205277 | || | || ||||||| || ||| || | | | ||||||||||||| Sbjct 99034 CCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACG 99093 Query 205278 GCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAG 205337 |||| | | | ||| | || || || | |||||| ||||||||||| || ||| | Sbjct 99094 GCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGG 99153 Query 205338 TCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGT 205397 | ||| || || |||||||| || | | ||||||| ||| ||||| |||| | Sbjct 99154 CAGTGTTGTTAAACACACGCAGCATGGGAATGATGCCGTTGGAGGTACCGTTGGTGCCGG 99213 Query 205398 TGATGGCCGAGCCTTCAGCCCTCA--CGTTGGAGAT---GGCCGCGCCAATCCCGCCAGA 205452 ||| |||||| || | | || |||| || | ||| | | ||||||| Sbjct 99214 CAATGTACGAGCCCGTGGCGCGGATGCGGTGGACATTGAGACCGATACCA-CCCGCCA-- 99270 Query 205453 ACACTTGGCGATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGT 205511 ||||| |||| || || ||||| || || ||| ||||| | || || || | Sbjct 99271 --TCTTGGAGATCATAGCACAGGTCTTG-AGGGTATCGTAAATGCCCTCAATCGAGTCCT 99327 Query 205512 CCGCCAGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAG 205570 || || |||| ||||| |||| || | ||||| ||| | || || |||| ||| Sbjct 99328 CCTTCA-TGTCGACCAGGAAGCAAGACGACAGCTGGGCCTGGGGCGTACCAGCGTTGAAC 99386 Query 205571 AGCGTGGGGCTGGCGTGGCTGAAGCGCTT-CTCG 205603 |||||||| ||| ||| ||||| ||| |||| Sbjct 99387 AGCGTGGGCGAGGCATGGGTGAAGAACTTGCTCG 99420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154444602560