Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 132 5e-26 seq27 123 3e-23 seq15 116 4e-21 >seq5 Length=956377 Score = 132 bits (146), Expect = 5e-26 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || | | ||||| |||| |||| || |||||| ||||| ||||| Sbjct 899398 TTACTGGCCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTA 899457 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || ||||| |||| || |||||||| || || || |||| ||||||||||| Sbjct 899458 GTCGGAGAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTC 899517 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | || | | |||||||||| ||||| ||||| ||| | | | || || || Sbjct 899518 AGGGGGAATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCAATGGTATCCGACG 899576 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || |||| ||| ||||| ||||| |||||||| || |||||||| ||||| Sbjct 899577 ACTCAACCTCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 Score = 129 bits (142), Expect = 7e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| || || |||||||| || || ||||| |||| ||| Sbjct 899651 ACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTCG 899710 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| || | ||||||||||| | || | | |||||||||| Sbjct 899711 AGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGA 899770 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||| | | | | |||||| || ||||| |||| || ||||| ||| Sbjct 899771 ATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTTG 899830 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || |||||||| ||||| Sbjct 899831 CCGGTAAGAGTCTTGACAAAGATCTGCAT 899859 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | || |||||| ||||| |||||||| || |||||||| | Sbjct 899872 ACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCC 899931 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| || || |||| ||||||||| || | || | || |||||| Sbjct 899932 GTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTT 899991 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||||| ||| | | | || || ||| || || || | |||| Sbjct 899992 GTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTATCCGACGACTCGACTTCGAGGGTGA 900050 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAAC 46581 |||| ||||| ||||| || || || Sbjct 900051 TGGTCTTGCCGGTCAGGGTCTTGAC 900075 Score = 116 bits (128), Expect = 4e-21 Identities = 130/171 (76%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| || ||||||||||| || || Sbjct 900181 CTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 900240 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | | |||||||||| ||||| ||||| ||| Sbjct 900241 GATCAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 900299 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | |||||| |||||||| || | |||||||| |||||||||| Sbjct 900300 TGTCGATAGTGTCGGAAGATTCCACCTCAAGGGTGATGGTCTTGCCCGTCA 900350 >seq27 Length=468876 Score = 123 bits (136), Expect = 3e-23 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| || || ||||||||||| || ||||| | || |||||||||||||| ||||| | Sbjct 115674 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 115733 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | || |||||||||| |||||| ||||| ||| | Sbjct 115734 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 115792 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || |||| || ||||| || |||||||| || || || Sbjct 115793 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 115852 Query 46583 AA 46584 || Sbjct 115853 AA 115854 >seq15 Length=634592 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| |||||||| | || || ||||||||||| ||||| | Sbjct 108844 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 108785 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||| || | || | || |||||||||| |||||| ||||| | Sbjct 108784 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 108725 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | || || || || |||||||| || || || | Sbjct 108724 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 108665 Query 46584 AGATTTGCATTTTG 46597 | || ||||| ||| Sbjct 108664 AAATCTGCATCTTG 108651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237863023520