Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq18 325 4e-84
seq5 123 2e-23
seq15 105 7e-18
seq27 100 3e-16
>seq18
Length=597235
Score = 325 bits (360), Expect = 4e-84
Identities = 583/845 (69%), Gaps = 15/845 (2%)
Strand=Plus/Plus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|| || || ||||| || |||||||| || || || || || | | || ||| |
Sbjct 244072 TTCTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGCGAGATGTTC 244131
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720
|||||| || |||||||| | | | |||| ||| | |||||| || | ||
Sbjct 244132 TCCATAAAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTTTCGTTGCCGA---GGGCCACC 244188
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780
||||| | |||||| || ||||| ||||| ||| |||| ||| || | || |||
Sbjct 244189 AGCAGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGC 244248
Query 132781 AGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839
|| |||| ||||| || || || || || | ||| ||| |||| || || ||||
Sbjct 244249 AGGGCGCAG-GGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCATCAGTGAT 244307
Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899
||||||| || | || | ||| || || | || ||| ||| | || ||| ||
Sbjct 244308 GATTTCCTCAATGAGCTTCTTGCTGGGGCGGTTGTTCAGGTGCGAGAAGAGCAGGCAGGC 244367
Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959
||||||| |||| ||||||||| | ||||| || |||||| || |||| ||||||
Sbjct 244368 AAAGTCGGTGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTGGAAAAGGTCAGGCCGGG 244427
Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019
||| || || || || ||||| || |||| ||| || ||| || ||||||| |||
Sbjct 244428 CATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCAAAGGCGCCGGAGAAGAAGATGCC 244487
Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCA 133079
||||||||| || || ||||||||||||| | | || || | || | | ||| |||||
Sbjct 244488 CTCGACGGCGGCAAAGGCCACCAGGCGCTGGGCAAAGGTCGACTCGTGGTCGGCAATCCA 244547
Query 133080 GCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139
|| ||||| |||||||| || ||| || || || ||||||||||| |||
Sbjct 244548 CTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATGGTGTCGATGGCGTTGAAC-- 244605
Query 133140 ACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCC 133197
| | || | | || || | | ||| ||||||||||| ||| ||| | ||
Sbjct 244606 AGGTAGCTGCGCTGGGCGGGCTCCTTGATGTACGTGTCGATGAGCAGCGAGTACGTCTCG 244665
Query 133198 GAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGC 133257
||||| | ||||||||| ||| || |||||||| ||||| || ||||| | |||
Sbjct 244666 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGGGATCTGG 244725
Query 133258 ACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAA 133317
|| || | ||| ||||| ||||| || |||||||| ||||| || |||||| ||
Sbjct 244726 ACCTCGCCTGAGAAGCGCTCAACCAGGTTCTCGTTGACAATGCCATCTGAGGCGGCAAAG 244785
Query 133318 AAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCG 133374
||||| || |||||| |||||| | |||| | ||||| ||| | |||||||
Sbjct 244786 AAGGCGAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGTCG 244845
Query 133375 CGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434
| ||||||||||| || | ||||||| | ||||| || ||||||||||| || |||
Sbjct 244846 TGGAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAGGACGCCTCGGCCTTCTTG 244905
Query 133435 TACAT 133439
|||||
Sbjct 244906 TACAT 244910
>seq5
Length=956377
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || ||||| || ||||| ||||| || | || || ||| | |
Sbjct 899631 ATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATTACGCTGGAGGTTGAGTCGTCG 899572
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || || | ||||| ||||| |||||| | |||||
Sbjct 899571 GATACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGACCA 899513
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || |||||||| |||| ||||| ||| |||||||||
Sbjct 899512 GCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTCTCCGACTACAA 899453
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| ||||| |||| ||||| ||||| |||||| || | || ||||
Sbjct 899452 CATCCAGAAGGAGTCGACTCTGCACTTGGTTCTGCGTCTGCGTGGTGGCC 899403
Score = 100 bits (110), Expect = 3e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || || || ||||| ||||||||| |||| |||||| | | || | | |
Sbjct 900077 TCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCGTCGGATACCATCG 900018
Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| |||| | || || |||| ||||| ||||| ||||| | || || ||||| ||
Sbjct 900017 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTG 899959
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | || ||||| ||||| || |||| ||||| || |||||||||||||| |||
Sbjct 899958 ATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAG 899899
Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| | || || || ||||||| |||
Sbjct 899898 GAGTCCACCCTCCACCTGGTGCTTCGT 899872
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||| || | || || ||| | ||
Sbjct 899859 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATTACTCTGGAGGTGGAGTCATCC 899800
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || || | ||||| ||||| || || | |||||
Sbjct 899799 GACACCATTGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 899740
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||||| ||| ||||| ||||| || |||| ||||| ||| |||||||||
Sbjct 899739 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCGGACTACAAC 899680
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| || ||||| | || || || |||| || |||
Sbjct 899679 ATTCAGAAGGAGTCTACTCTTCACCTGGTTCTCCGT 899644
Score = 82.4 bits (90), Expect = 8e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|||||||| ||||||||| | || || || | |||||| | | |||| | ||
Sbjct 900348 ACGGGCAAGACCATCACCCTTGAGGTGGAATCTTCCGACACTATCGACAACG-TCAAGTC 900290
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| || | ||||| ||||| ||||| | || || ||||| || || | || |||||
Sbjct 900289 CAAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAGCGTCTGATCTTTGCTGGCAA 900230
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
||||| || |||| ||||| || |||||||||||||| ||||| | || || ||
Sbjct 900229 GCAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTCCA 900170
Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470
| || |||||| || | || ||
Sbjct 900169 CCTCGTCCTGCGTCTGCGTGGTGG 900146
>seq15
Length=634592
Score = 105 bits (116), Expect = 7e-18
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || ||||| || || || ||| |||| || ||| ||
Sbjct 108652 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 108711
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || || |||| ||||| ||||| |||||| | ||
Sbjct 108712 TCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAT 108771
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 108772 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 108831
Query 38421 AACATCCAAAAGG 38433
|||||||| ||||
Sbjct 108832 AACATCCAGAAGG 108844
>seq27
Length=468876
Score = 100 bits (110), Expect = 3e-16
Identities = 133/182 (73%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || | |||| |
Sbjct 115854 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 115795
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| ||
Sbjct 115794 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 115736
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| ||||| ||||| || || | |||||||| |||||||||||| || ||
Sbjct 115735 GATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAA 115676
Query 38432 GG 38433
||
Sbjct 115675 GG 115674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172324835840
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