Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq36 214 2e-50 seq40 192 7e-44 >seq36 Length=308131 Score = 214 bits (236), Expect = 2e-50 Identities = 286/398 (72%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||||| ||| || || || ||||| | ||||| ||||||||||| | ||| Sbjct 257159 TCCTCACCACCCAGGTGGGTGTCACCAGCGGTGGACTTGACCTCAAAGATACCATCCTCA 257100 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | || || ||||| || |||||||||||||| || || || || ||||| Sbjct 257099 ATGGTCAGCAGAGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 257040 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 ||| | || ||||| || |||||||| || || || || || || || || || || Sbjct 257039 TCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTTGATG 256980 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| ||| ||| || || |||||| | || || || || || || || || ||| Sbjct 256979 ATACGCAGAACGTTAAGACCGGCAATAAGACCGGCGTCCTTGGTGGCCTGACGCTGAGAA 256920 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| ||||| || ||||| |||| | || | |||| || ||||| Sbjct 256919 TCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTGTTAACGCTGGTACCCAGGTACGAC 256860 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || ||| | || ||| ||||| || ||||| || || ||||| |||| | ||||| Sbjct 256859 TCAGCGGTCTCACGCATCTTGGTCAGGACCATGGAGGAGATCTCCTCAGGAGTGAACTGC 256800 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || ||||| || || || || | ||| ||||| || Sbjct 256799 TTGGTCTCACCCTTGAACTCGACCTGAATGATGGGCTT 256762 >seq40 Length=249150 Score = 192 bits (212), Expect = 7e-44 Identities = 529/803 (66%), Gaps = 41/803 (5%) Strand=Plus/Plus Query 7007 CCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGG 7066 |||| ||||| | ||| |||| ||||| | || ||||| ||||| |||||||||||| Sbjct 98554 CCTT-ACCCGACAGGATACCGGCCTGGACGGCGGCACCGTAGGCGACGGCCTCATCGGGG 98612 Query 7067 TTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTC 7126 || || | || | ||| | || ||||| || |||| || | || | || || || Sbjct 98613 TTGATGGACTTCTCCAGCTTCTTGCCGTTGAAGAAATCAGACAGCAGCTTCTGGATCTTG 98672 Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGA----- 7181 ||||| || || || |||||||||| ||||| || | || | | || |||| Sbjct 98673 GGGATACGGGTGGAACCACCGACCAGGACGATCTCGTCGACCTGCTTCTTGTCGAGGCCA 98732 Query 7182 ---TCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCA 7238 || || || ||| | | || || |||| | | ||| | || Sbjct 98733 GCGTCCTTCAGGACCGAGG--------CAACGGGCTCCAGAGTGCCAGCGAA---GGCCT 98781 Query 7239 TACA---CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG--AAATCAACGCCGTC 7293 | | ||| ||||| ||||| |||||||| || || | || || || | ||||| Sbjct 98782 TGGAGTTCAGCTCCTCGAAACGGGCACGGGTGATC--TGGACAGTGAAGTCCTCACCGTC 98839 Query 7294 GTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCG 7353 | | | | ||||| |||||||| || || || ||||| | || ||||| || || Sbjct 98840 GAAGAGAGTGTCAATCTCAATGGTGGTCTGAGCACCGGAAGACAGGGTACGCTTGGCACG 98899 Query 7354 CTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATG 7413 ||| || || || || | |||||| |||||||| | | ||| || | ||| ||||| Sbjct 98900 CTCGCAAGCGGTACGGAGACGACGCAGGGCACGGGCATCACCAGACAGATCCTTCTTGGT 98959 Query 7414 TTTACGTTTAAACTCTTCAGAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCAC 7472 || || | || || | | ||| ||| | | || | | ||||| || | ||||| Sbjct 98960 CTTGCGGGTGAAGTCCTTCTTGCAGTAGTCCA-GCAGGTTGGTGTCGAAGTCCTGACCAC 99018 Query 7473 CCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACA 7532 ||| ||| || || || ||||| || ||||| |||| ||| || | ||||| | || Sbjct 99019 CCAGGTGAGTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTCAGCA 99078 Query 7533 ACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT 7592 || ||||| || |||||||||||||| || | || || ||||| || | ||| Sbjct 99079 GGGAGACATCGAAAGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCT--TCTC 99136 Query 7593 TGTTCTTATCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646 | |||| | |||||||| ||||| || || || || || || || || |||| Sbjct 99137 CGA-CTTACCAGCACCCAGACCGTAGGCGATGGCAGCGGCAGTAGGCTCGTTGATGATAC 99195 Query 7647 GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706 | ||| ||||||||||||||| | | || || || || || || || || |||| Sbjct 99196 GCAGAACGTTCAGGCCAGCAATGGCACCGGCGTCCTTGGTAGCCTGACGCTGGTTGTCGT 99255 Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCG 7766 | |||||||| ||||| || | ||| || | | ||| ||||| |||| | | || | Sbjct 99256 TGAAGTAGGCGGGGACGGTGATGACAGCCTTCTCGACCTTCTTGCCGATCTTGGCCTCGG 99315 Query 7767 CGATATCTTTCAT---TTTGGTA 7786 | || || ||||| ||||||| Sbjct 99316 CAATCTCCTTCATCTGTTTGGTA 99338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132196623840