Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq36 214 2e-50
seq40 192 7e-44
>seq36
Length=308131
Score = 214 bits (236), Expect = 2e-50
Identities = 286/398 (72%), Gaps = 0/398 (0%)
Strand=Plus/Minus
Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522
|| |||||||||| ||| || || || ||||| | ||||| ||||||||||| | |||
Sbjct 257159 TCCTCACCACCCAGGTGGGTGTCACCAGCGGTGGACTTGACCTCAAAGATACCATCCTCA 257100
Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582
||| | | || || ||||| || |||||||||||||| || || || || |||||
Sbjct 257099 ATGGTCAGCAGAGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 257040
Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642
||| | || ||||| || |||||||| || || || || || || || || || ||
Sbjct 257039 TCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTTGATG 256980
Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702
||||| ||| ||| || || |||||| | || || || || || || || || |||
Sbjct 256979 ATACGCAGAACGTTAAGACCGGCAATAAGACCGGCGTCCTTGGTGGCCTGACGCTGAGAA 256920
Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762
||||| |||||||| ||||| || ||||| |||| | || | |||| || |||||
Sbjct 256919 TCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTGTTAACGCTGGTACCCAGGTACGAC 256860
Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822
|| ||| | || ||| ||||| || ||||| || || ||||| |||| | |||||
Sbjct 256859 TCAGCGGTCTCACGCATCTTGGTCAGGACCATGGAGGAGATCTCCTCAGGAGTGAACTGC 256800
Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860
|| || ||||| || || || || | ||| ||||| ||
Sbjct 256799 TTGGTCTCACCCTTGAACTCGACCTGAATGATGGGCTT 256762
>seq40
Length=249150
Score = 192 bits (212), Expect = 7e-44
Identities = 529/803 (66%), Gaps = 41/803 (5%)
Strand=Plus/Plus
Query 7007 CCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGG 7066
|||| ||||| | ||| |||| ||||| | || ||||| ||||| ||||||||||||
Sbjct 98554 CCTT-ACCCGACAGGATACCGGCCTGGACGGCGGCACCGTAGGCGACGGCCTCATCGGGG 98612
Query 7067 TTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTC 7126
|| || | || | ||| | || ||||| || |||| || | || | || || ||
Sbjct 98613 TTGATGGACTTCTCCAGCTTCTTGCCGTTGAAGAAATCAGACAGCAGCTTCTGGATCTTG 98672
Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGA----- 7181
||||| || || || |||||||||| ||||| || | || | | || ||||
Sbjct 98673 GGGATACGGGTGGAACCACCGACCAGGACGATCTCGTCGACCTGCTTCTTGTCGAGGCCA 98732
Query 7182 ---TCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCA 7238
|| || || ||| | | || || |||| | | ||| | ||
Sbjct 98733 GCGTCCTTCAGGACCGAGG--------CAACGGGCTCCAGAGTGCCAGCGAA---GGCCT 98781
Query 7239 TACA---CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG--AAATCAACGCCGTC 7293
| | ||| ||||| ||||| |||||||| || || | || || || | |||||
Sbjct 98782 TGGAGTTCAGCTCCTCGAAACGGGCACGGGTGATC--TGGACAGTGAAGTCCTCACCGTC 98839
Query 7294 GTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCG 7353
| | | | ||||| |||||||| || || || ||||| | || ||||| || ||
Sbjct 98840 GAAGAGAGTGTCAATCTCAATGGTGGTCTGAGCACCGGAAGACAGGGTACGCTTGGCACG 98899
Query 7354 CTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATG 7413
||| || || || || | |||||| |||||||| | | ||| || | ||| |||||
Sbjct 98900 CTCGCAAGCGGTACGGAGACGACGCAGGGCACGGGCATCACCAGACAGATCCTTCTTGGT 98959
Query 7414 TTTACGTTTAAACTCTTCAGAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCAC 7472
|| || | || || | | ||| ||| | | || | | ||||| || | |||||
Sbjct 98960 CTTGCGGGTGAAGTCCTTCTTGCAGTAGTCCA-GCAGGTTGGTGTCGAAGTCCTGACCAC 99018
Query 7473 CCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACA 7532
||| ||| || || || ||||| || ||||| |||| ||| || | ||||| | ||
Sbjct 99019 CCAGGTGAGTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTCAGCA 99078
Query 7533 ACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT 7592
|| ||||| || |||||||||||||| || | || || ||||| || | |||
Sbjct 99079 GGGAGACATCGAAAGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCT--TCTC 99136
Query 7593 TGTTCTTATCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646
| |||| | |||||||| ||||| || || || || || || || || ||||
Sbjct 99137 CGA-CTTACCAGCACCCAGACCGTAGGCGATGGCAGCGGCAGTAGGCTCGTTGATGATAC 99195
Query 7647 GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706
| ||| ||||||||||||||| | | || || || || || || || || ||||
Sbjct 99196 GCAGAACGTTCAGGCCAGCAATGGCACCGGCGTCCTTGGTAGCCTGACGCTGGTTGTCGT 99255
Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCG 7766
| |||||||| ||||| || | ||| || | | ||| ||||| |||| | | || |
Sbjct 99256 TGAAGTAGGCGGGGACGGTGATGACAGCCTTCTCGACCTTCTTGCCGATCTTGGCCTCGG 99315
Query 7767 CGATATCTTTCAT---TTTGGTA 7786
| || || ||||| |||||||
Sbjct 99316 CAATCTCCTTCATCTGTTTGGTA 99338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132196623840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |