Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq53 176 5e-39 seq7 102 1e-16 >seq53 Length=159929 Score = 176 bits (194), Expect = 5e-39 Identities = 636/987 (64%), Gaps = 31/987 (3%) Strand=Plus/Plus Query 110102 CATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA-------GAG 110154 ||||||| || ||||| ||||| | |||||| ||||| || |||||| | | Sbjct 98467 CATCCGCCAGGCCCTGGACACCAACACCAATAGGGCGGTGGCGCATGTTGCTGTTCTGCG 98526 Query 110155 CGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTC 110214 | ||| ||| ||||||| |||| ||| |||| || || || || | Sbjct 98527 CCTCGGGCA-------CGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTTGCGCACA 98579 Query 110215 ACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACA 110274 || ||| |||| || || || || | | | ||| || ||| | | | | |||| Sbjct 98580 ACTACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTACTCGTTCTTGTTGTAGTCGACA 98639 Query 110275 TATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTAT 110334 | || ||||| | || || || |||||||| | | ||| || | ||| Sbjct 98640 AACGACGGCAGAGCCAGCGAAGCCAGGTTGCACACGGCAACCTCATCCGGCGCACAGTAC 98699 Query 110335 TCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGAT 110394 || | ||| ||||| |||| |||||| || ||| |||| ||||||||| || Sbjct 98700 TCGATAATCTCCGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTC 98759 Query 110395 TTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTG 110454 ||| |||||| ||||| || |||||| | ||| | ||||| || ||||| | || Sbjct 98760 TTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCGGTCTGCGCCTCC 98819 Query 110455 AGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTC 110513 |||||||| | ||| | | || | ||| || | || | || | || |||| ||| Sbjct 98820 AGAATGGCGTACCACAGCTTCTG-GGCCTTGATCGAGGCACGACCGCGGCCCTCCTGCTC 98878 Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573 |||||| ||||| ||||||| |||| ||||| || | || || || Sbjct 98879 GTACTTTTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTC 98938 Query 110574 GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGG 110633 || ||| || | || | ||| | | || ||| || | |||||||||||||||||| Sbjct 98939 GTTGGGGCACATCAGAGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAACAGGTCAGG 98998 Query 110634 AATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCG 110693 ||||||| ||| |||||| |||||| ||| ||||||| | || ||||| ||| Sbjct 98999 GATCCACAGAGCCAGGAAAAGATCACGGGCGCGAACCTCTTCCTTGCCGTGGTTCTTGCG 99058 Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC 110753 || || | || || | | ||| | |||||| || || || || | || | || || Sbjct 99059 CAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACC 99118 Query 110754 ------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAG 110807 ||| | | || |||||| || ||||| || ||| || || || | || Sbjct 99119 GGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAACACACGCAG 99175 Query 110808 CATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACG 110867 ||| ||||| || || | ||| ||| || || || ||| || |||| || Sbjct 99176 CATGGGAATGATGCCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAGCCCGTGGCGCG 99235 Query 110868 AATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTG 110926 ||| ||||| || | ||| |||||||||||| ||| || ||||| ||| Sbjct 99236 GATGCGGTGGACATTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCT- 99294 Query 110927 TGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAG 110986 |||| ||| | ||||| || |||||||| || |||| || | | || |||||||| | Sbjct 99295 TGAGGGTATCGTAAATGCCCTCAATCGAGTCCTCCTTCATGTCGACCAGGAAGCAAGACG 99354 Query 110987 ACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGAC 111046 ||| ||| | | ||||| || || ||||| || || || | ||||| ||| ||| Sbjct 99355 ACAGCTGGGCCTGGGGCGTACCAGCGTTGAACAGCGTGGGCGAGGCATGGGTGA--AGAA 99412 Query 111047 CTTG--GGACATCTTGTTGTATGTGTC 111071 |||| ||||| |||||| || || Sbjct 99413 CTTGCTCGACATGAGGTTGTACGTCTC 99439 >seq7 Length=948245 Score = 102 bits (112), Expect = 1e-16 Identities = 276/417 (66%), Gaps = 18/417 (4%) Strand=Plus/Plus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| ||| ||||||||||| || || | |||||||| |||| |||||||| |||||| Sbjct 403762 TGTTGAAGCCGTCCATTTCCGTCAGGATCTGGTTGAGCGTCGACTCACGCTCGTCGTTGC 403821 Query 11648 AGGGCATACCACCTGCCGAACGCTTCTT------ACCGACA----GCGTCAATCTCATCG 11697 | | ||| ||| | || || |||| | || |||||||| ||| Sbjct 403822 CG--CCGCCCA--TGCGGTTCGAGTCGGTGCGCGACCGGCCAATGGCATCAATCTCGTCG 403877 Query 11698 ATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTC 11757 || || | ||| ||||| || ||||||| | || | || || |||||| | Sbjct 403878 ATAAAGATGATGCACGGCGCATTCTTACGTGCCGTGGCAAACAAATCGCGCACACGCGAC 403937 Query 11758 GCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAA 11815 | || ||||| || |||||||| || || | | | || || | ||||| ||| || | Sbjct 403938 GGACCCACACCCACAAACATCTCGACAAACTCGGATCCGCTGA-CGCTGAA-GAACGGCA 403995 Query 11816 CATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAG 11875 | ||||| ||||| |||| || || || ||||| |||||||| || | || | Sbjct 403996 CGCCCGACTCGCCAGCCGTGGCCTTGGCCAGCAGCGTCTTGCCCGTACCGGGCGGGCCCG 404055 Query 11876 CGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGA 11935 || | |||||||| ||||||||||| || | || | || |||||||||| Sbjct 404056 ACAGGATCGCGCCACGCGGGATCTTGGCGCCTAGCCGAACAAACTTTTCGGGCTTCTTGA 404115 Query 11936 GGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGG 11992 |||| | ||||| |||| || || ||||||| ||| || || | || |||| Sbjct 404116 GGAACTGCACAAACTCCATAATCTCGACCTTGGCCTCGTCCATGCCGGCCACGTCGG 404172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975440472800