Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq53 185 1e-41 seq18 107 2e-18 >seq53 Length=159929 Score = 185 bits (204), Expect = 1e-41 Identities = 895/1400 (64%), Gaps = 45/1400 (3%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||| | || || || || ||||| || || || |||| || || | ||| | Sbjct 98124 TAAATGTTGGAAGTATACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTG 98183 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || || | || || ||| || | ||| | | |||||| | ||| Sbjct 98184 GCCGTCGGCATCGGCGCAAGCAGCAGCGAGTTGCGCACACCATGCTGCTTGATCTGCTCC 98243 Query 106055 TTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAG 106113 ||||| ||||||| || | ||| || | || |||| |||| ||||| || || Sbjct 98244 TTGAGCGATGCCCAGTCCCAGAGGTCGCTGGGCGTGACGTTCC-ACATGTCAAACTGCAG 98302 Query 106114 CACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC-CA 106172 | || ||||| || || ||||| | || || | || | || | || || Sbjct 98303 AATGCCCTGGGAAACAGGCGAGCCCTCGTACGTAGAGTACGTTCCCTC--CTCCTGCGCA 98360 Query 106173 ATTCACAGCT-CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 || || | |||| ||| | ||||| || ||||| |||||||| | | || | | Sbjct 98361 ATCTCCATCGACGCCGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATTTGCGTGTTGAGC 98420 Query 106232 TCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGA 106286 | || || | || ||||| |||| |||| || || ||||||| | Sbjct 98421 TTGCGAGCCTCGGCCGACTCAAAAGGCATGCGAAGCGCCAAGAAGG-----CATCCGCCA 98475 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA- 106345 | || || ||||| | ||||||||| | ||| ||||| || || |||| ||| Sbjct 98476 GGCCCTGGACACCAACACCAATAGGGCGGTGGCGCATGTTGCTGTTCTGCGC---CTCGG 98532 Query 106346 --ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 106403 ||||| || || |||||||| ||||| || || ||| | ||| |||| Sbjct 98533 GCACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTTGCGCACAACTACCTTGGTGA 98592 Query 106404 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 106463 || || || || | | || | | | | | | |||| || || || | Sbjct 98593 CCTCGTGCAGCTTCTGGAAGTCGTACTCGTTCTTGTTGTAGTCGACAAACGACGGCAGAG 98652 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 106523 | | || |||| ||||| || || ||||||| | |||||| | ||| || | Sbjct 98653 CCAGCGAAGCCAGGTTGCACACGGCAACCTCATCCGGCGCACAGTACTCGATAATCTCCG 98712 Query 106524 TACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACG 106583 | |||| |||||| || || || |||| ||||| ||||| ||||| |||||| Sbjct 98713 TGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGT 98772 Query 106584 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCC 106643 |||||||| |||||| | || | || ||||| ||||| | || ||||| || | || Sbjct 98773 GGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCGGTCTGCGCCTCCAGAATGGCGTACC 98832 Query 106644 ACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAG 106702 ||| | || | | || | | | ||| | || |||||| |||||||||| ||| Sbjct 98833 ACAGCTTCTGGGCCTTGATCGA-GGCACGACCGCGGCCCTCCTGCTCGTACTTTTCGTAC 98891 Query 106703 AGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 106762 || || ||||||||||| || ||||| || || || || || || || | Sbjct 98892 AGCGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATC 98951 Query 106763 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-- 106820 |||| ||| | | | || ||| || ||||||||||| ||||| || |||||||| | Sbjct 98952 AGAGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAACAGGTCAGGGATCCACAGAGCC 99011 Query 106821 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 106880 | |||| ||||| | ||| ||||||| | || ||||| || | ||||||| Sbjct 99012 AGGAAA--AGATCACGGGCGCGAACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGA 99069 Query 106881 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGA 106936 |||| | | ||| |||||||| ||||| || || | || | | || | | | Sbjct 99070 ACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGT 99129 Query 106937 CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 106996 | ||| | || | || ||||| || ||| |||||| || || ||||| ||||| || Sbjct 99130 TG-CCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAACACACGCAGCATGGGAATGATG 99188 Query 106997 CCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGGA 107054 || | || ||| || || || || |||||| |||| | | |||| Sbjct 99189 CCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAG--CCCGTGGCGCGGATGCGGTGGA 99246 Query 107055 TGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCAT 107114 | | || ||||| || ||| ||| ||||| ||||| | | || || | | Sbjct 99247 CATTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCGT 99306 Query 107115 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 107174 | || || | || ||||||||||| || ||| ||||||||| |||| ||| || | Sbjct 99307 AAATGCCCTCAATCGAGTCCTCCTTCATGTCGACCAGGAAGCAAGACGACAGCTG-GGCC 99365 Query 107175 T-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACA 107231 | || |||||||| ||||| || || || | || || ||| | | |||| |||| Sbjct 99366 TGGGGCGTACCAGCGTTGAACAGCGTGGGCGAGGCATGGGTGA--AGAACTTGCTCGACA 99423 Query 107232 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT-TCCCCGTGGATGCCGATGGCCACA 107290 | || ||| ||||| | ||| ||| | ||| || || |||||| | |||||| Sbjct 99424 TGAGGTTGTACGTCTCAATGACGCGATCGA-CTCTGTCGCCCCAGATGCCAACAGCCACA 99482 Query 107291 CGCATAAACATGTATTGGGG 107310 ||||||| ||||| ||||| Sbjct 99483 CGCATAATCATGTGCTGGGG 99502 >seq18 Length=597235 Score = 107 bits (118), Expect = 2e-18 Identities = 300/455 (66%), Gaps = 14/455 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| ||||||||||||||||||||||| ||| | || ||||| |||||| Sbjct 244078 TAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGCGAGATGTTCTCCATA 244137 Query 117046 AAGTCAAATGGATTCTTCG--CGTT---CCAAATGGGTGGC-ACCCCAACTTGTTTGAGG 117099 |||||||| || ||| | | || | || | | || | | | || || Sbjct 244138 AAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTTTCGTTGCCGAGGGCCACC------AGC 244191 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 ||||| || | ||| |||||||||||| ||| || | |||||| |||| || Sbjct 244192 AGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGG 244251 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || || || || || | |||| | |||||||| | || || || | | ||| Sbjct 244252 GCGCAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATT 244311 Query 117220 GCGTGGAT-AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAA 117278 | | || || ||| | |||| | || || | ||||||| |||||| Sbjct 244312 TCCTCAATGAGCTTCT-TGCTGGGGCGGTTGTTCAGGTGCGAGAAGAGCAGGCAGGCAAA 244370 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 || ||| || ||||| || || ||||| || || || || ||| ||||| ||||| Sbjct 244371 GTCGGTGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTGGAAAAGGTCAGGCCGGGCAT 244430 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||||| ||||| || ||| |||| | | || | |||||||||||||| ||||| Sbjct 244431 CAGACCACGCTTGCGCAGCCAGAAAATGGAGGCAAAGGCGCCGGAGAAGAAGATGCCCTC 244490 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 || ||||| || | ||||||| ||| |||| Sbjct 244491 GACGGCGGCAAAGGCCACCAGGCGCTGGGCAAAGG 244525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980239518240