Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq5 131 4e-25
seq27 125 2e-23
seq15 123 6e-23
>seq5
Length=956377
Score = 131 bits (144), Expect = 4e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| ||||||||||| ||||| || ||||| ||||| || | || || | || || ||
Sbjct 899650 AACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTC 899709
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || ||||| || || || || ||||| ||||| || || || ||||| ||
Sbjct 899710 GAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTG 899769
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| || || ||||||||||| || ||||| || || |||| |||||
Sbjct 899770 AATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTT 899829
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||| || || || | |||||
Sbjct 899830 GCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859
Score = 127 bits (140), Expect = 5e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
|| ||| | ||| ||||| ||||| || || || ||||| |||| || || | || ||
Sbjct 899419 CAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTC 899478
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
|| ||||||||||| || ||||| || || || ||||| || ||||| || || |||||
Sbjct 899479 CTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTC 899538
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
||||| || ||||||||| |||||||| ||||| || || || || |||| ||
Sbjct 899539 CTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACCTCCAGCGTAATGGT 899598
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || |||| || || || || | |||||
Sbjct 899599 CTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631
Score = 125 bits (138), Expect = 2e-23
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| || | ||||| | || || ||
Sbjct 899879 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCCTCA 899938
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || || || || || ||||||||||| || ||||| ||
Sbjct 899939 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGG 899998
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || ||||| ||||| || ||||| ||||| | |||||
Sbjct 899999 ATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGGGTGATGGTCTTG 900058
Query 195112 CCTGTCAAAGTTTTTACGA 195130
|| |||| || || ||||
Sbjct 900059 CCGGTCAGGGTCTTGACGA 900077
>seq27
Length=468876
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| ||||| ||||| |||| || || | ||||| ||||||||||| || ||||||||
Sbjct 115676 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 115735
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
|| || || ||||| || |||||||| || ||||| || || || ||||||||| ||
Sbjct 115736 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 115795
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| |||||||| || || || ||||||| ||||| || |||| || || |||||
Sbjct 115796 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 115854
>seq15
Length=634592
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| ||||| | ||||| || |||||||| || ||||||||
Sbjct 108842 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 108783
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
|| || || || || || |||||||| || ||||| || || || |||||| || ||
Sbjct 108782 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 108723
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132
||||||||||| || || || ||||||| |||||| || |||| || || |||||
Sbjct 108722 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 108663
Query 195133 ACTTGCAT 195140
| |||||
Sbjct 108662 ATCTGCAT 108655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109480519642292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |