Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 6e-16 seq15 86.0 4e-12 seq27 84.2 1e-11 >seq5 Length=956377 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||||||| | || || ||||| ||||| ||||| || || | || | || Sbjct 899419 CAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTC 899478 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 899479 CTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTC 899538 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| |||||| | || | || | |||||| || | || ||||| Sbjct 899539 CTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACCTCCAGCGTAATGGT 899598 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || ||||| ||||||||||||||| Sbjct 899599 CTTGCCAGTCAGCGTCTTGACAAAGATCTGCATA 899632 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || || ||||||||||| |||||||| || | || | || || Sbjct 899650 AACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTC 899709 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || || || |||||||| | || | ||||||||||| Sbjct 899710 GAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTG 899769 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| || || | || | || | ||| || || | || ||||| || Sbjct 899770 AATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTT 899829 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || |||||||| ||||||||||||||| Sbjct 899830 GCCGGTAAGAGTCTTGACAAAGATCTGCATA 899860 >seq15 Length=634592 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/222 (70%), Gaps = 11/222 (5%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 |||||| || ||||| |||| | ||||| ||||| ||||| || || | || || Sbjct 108866 CTCAAA--CATGTGAAGC-TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA 108810 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||||||| || || || || || || || ||||| || | || | ||||||||| Sbjct 108809 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTG 108750 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGT 34942 || ||||| ||||| || | ||||| || || |||||| |||| ||| Sbjct 108749 TCCTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGT 108694 Query 34943 TATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || ||||| || ||||| || || |||||||| || Sbjct 108693 AATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCATCTT 108652 >seq27 Length=468876 Score = 84.2 bits (92), Expect = 1e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| ||||| || ||| | || |||| || ||||| || || || || || Sbjct 115676 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 115735 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| ||||| |||||| | Sbjct 115736 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 115795 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 |||| || || ||| || || | ||| ||||| || ||||| || ||||| || || Sbjct 115796 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 115854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633299308128