Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq5 98.7 6e-16
seq15 86.0 4e-12
seq27 84.2 1e-11
>seq5
Length=956377
Score = 98.7 bits (108), Expect = 6e-16
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
|| ||||||||| | || || ||||| ||||| ||||| || || | || | ||
Sbjct 899419 CAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTC 899478
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|||||||| || || ||||| || || || |||||||| | || | |||||||||||
Sbjct 899479 CTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTC 899538
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
|||||| |||||| | || | || | |||||| || | || |||||
Sbjct 899539 CTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACCTCCAGCGTAATGGT 899598
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || || ||||| |||||||||||||||
Sbjct 899599 CTTGCCAGTCAGCGTCTTGACAAAGATCTGCATA 899632
Score = 96.9 bits (106), Expect = 2e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||| ||||| || || ||||||||||| |||||||| || | || | || ||
Sbjct 899650 AACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTC 899709
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || ||||| || || || || |||||||| | || | |||||||||||
Sbjct 899710 GAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTG 899769
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||||| || || | || | || | ||| || || | || ||||| ||
Sbjct 899770 AATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTT 899829
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || |||||||| |||||||||||||||
Sbjct 899830 GCCGGTAAGAGTCTTGACAAAGATCTGCATA 899860
>seq15
Length=634592
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/222 (70%), Gaps = 11/222 (5%)
Strand=Plus/Minus
Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826
|||||| || ||||| |||| | ||||| ||||| ||||| || || | || ||
Sbjct 108866 CTCAAA--CATGTGAAGC-TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA 108810
Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886
|| |||||||| || || || || || || || ||||| || | || | |||||||||
Sbjct 108809 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTG 108750
Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGT 34942
|| ||||| ||||| || | ||||| || || |||||| |||| |||
Sbjct 108749 TCCTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGT 108694
Query 34943 TATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| || || ||||| || ||||| || || |||||||| ||
Sbjct 108693 AATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCATCTT 108652
>seq27
Length=468876
Score = 84.2 bits (92), Expect = 1e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||||||||| ||||| || ||| | || |||| || ||||| || || || || ||
Sbjct 115676 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 115735
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
|| || |||||||| | || | ||||||||||| ||||| |||||| |
Sbjct 115736 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 115795
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972
|||| || || ||| || || | ||| ||||| || ||||| || ||||| || ||
Sbjct 115796 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 115854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633299308128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |