Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq3 98.7 8e-16
>seq3
Length=1108403
Score = 98.7 bits (108), Expect = 8e-16
Identities = 199/294 (68%), Gaps = 6/294 (2%)
Strand=Plus/Minus
Query 29988 CACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044
|||||||||||| | ||| |||| ||||| || || ||||| || ||||
Sbjct 700366 CACGTAAAACTGCGCAAACA---TGTGACACGGCGGCAGCGCCATCTTCTTCAGGTCTGC 700310
Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104
|||||||| |||| || ||||||||| | ||| | || ||||| | | || |||
Sbjct 700309 CGGGTTCCACGCGCTCATGATGATGCGTCGGTCGTACGGCGTGTTCTTCAGCTTGTGCAC 700250
Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30164
||| |||||| || || ||| || | |||||| | | | || |||||
Sbjct 700249 CACGTCCGCCAGCTGGTCGACGCCCTGGCCTGTGTAGTCGGTCTGCGCATCGACATACTC 700190
Query 30165 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30224
|| |||||||| | ||||||||| |||||||| || |||||||| ||||| | | |||
Sbjct 700189 GGCGCCGAAATGGCGCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCGGCGCGGTG 700130
Query 30225 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278
| | ||| |||| | | | | || |||||| |||||||||||||
Sbjct 700129 GCCCAGGCCGACGCTGTCGAGGTACGCGCGCGACCCGTTGCCGTCCCAGATCTT 700076
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826
||||||| | ||||| | || | ||| || ||||| || ||||| || |||
Sbjct 700683 GGAAAGGCGCGCGGCTCGCGCTGCACCTGCACCTGCAGCGCGTCGACGTGGTCGGCGTAC 700624
Query 29827 ACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885
||||| ||||| |||| | ||| | || || || || | || ||| || | ||
Sbjct 700623 ACGTGCGCGTCGCCCATGACGTGCGTCAGGCTG-CCGGGCACGAGGTCGGCCGCGCGCGC 700565
Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945
| ||||| |||||| || ||||| || ||||| ||||| || ||||| ||||||||
Sbjct 700564 GAGCATGTGCGTGAGCAGCGAGTACGACGCAATGTTGAAGGGCACGCCGAGGCCCATGTC 700505
Query 29946 CCCCGACCTCTGGTAGAGCTGACA 29969
| ||| | |||||||||||| ||
Sbjct 700504 GCACGAGCGCTGGTAGAGCTGGCA 700481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617221517948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |