Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 >seq3 Length=1108403 Score = 98.7 bits (108), Expect = 8e-16 Identities = 199/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 29988 CACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 |||||||||||| | ||| |||| ||||| || || ||||| || |||| Sbjct 700366 CACGTAAAACTGCGCAAACA---TGTGACACGGCGGCAGCGCCATCTTCTTCAGGTCTGC 700310 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 |||||||| |||| || ||||||||| | ||| | || ||||| | | || ||| Sbjct 700309 CGGGTTCCACGCGCTCATGATGATGCGTCGGTCGTACGGCGTGTTCTTCAGCTTGTGCAC 700250 Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30164 ||| |||||| || || ||| || | |||||| | | | || ||||| Sbjct 700249 CACGTCCGCCAGCTGGTCGACGCCCTGGCCTGTGTAGTCGGTCTGCGCATCGACATACTC 700190 Query 30165 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30224 || |||||||| | ||||||||| |||||||| || |||||||| ||||| | | ||| Sbjct 700189 GGCGCCGAAATGGCGCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCGGCGCGGTG 700130 Query 30225 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278 | | ||| |||| | | | | || |||||| ||||||||||||| Sbjct 700129 GCCCAGGCCGACGCTGTCGAGGTACGCGCGCGACCCGTTGCCGTCCCAGATCTT 700076 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 ||||||| | ||||| | || | ||| || ||||| || ||||| || ||| Sbjct 700683 GGAAAGGCGCGCGGCTCGCGCTGCACCTGCACCTGCAGCGCGTCGACGTGGTCGGCGTAC 700624 Query 29827 ACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 ||||| ||||| |||| | ||| | || || || || | || ||| || | || Sbjct 700623 ACGTGCGCGTCGCCCATGACGTGCGTCAGGCTG-CCGGGCACGAGGTCGGCCGCGCGCGC 700565 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 | ||||| |||||| || ||||| || ||||| ||||| || ||||| |||||||| Sbjct 700564 GAGCATGTGCGTGAGCAGCGAGTACGACGCAATGTTGAAGGGCACGCCGAGGCCCATGTC 700505 Query 29946 CCCCGACCTCTGGTAGAGCTGACA 29969 | ||| | |||||||||||| || Sbjct 700504 GCACGAGCGCTGGTAGAGCTGGCA 700481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617221517948