Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq53 403 3e-107 seq18 219 8e-52 >seq53 Length=159929 Score = 403 bits (446), Expect = 3e-107 Identities = 1009/1511 (67%), Gaps = 39/1511 (3%) Strand=Plus/Plus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| || || | ||||| | | |||||||| ||| ||||| || Sbjct 98082 GGGTTGACAACCTGGAACTCGCCAGCCAGCACACGGCGCTGGTAAATGTTGGAAGTATAC 98141 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || ||||||||| ||||||||||| | |||||||| || ||||| || || Sbjct 98142 GGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCA 98201 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 | ||| || ||| | ||| || |||| ||| | | ||| |||||||||| Sbjct 98202 AGCAGCAGCGAGTTGCGCACACCATGCTGCTTGATCTGCTCCTTGAGCGATGCCCAGTCC 98261 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || ||||| | | | |||||||||||||||||||||| ||||| | | Sbjct 98262 CAG---------AGGTCGCTGGGCGTGACGTTCCACATGTCAAACTGCAGAATGCCCTGG 98312 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 || || ||||| ||| | ||||| | || | ||||| || | ||| ||| Sbjct 98313 GAAACAGGCGAGCCCTCGTACGTAGAGTACGTTCCCTCCTCCTGCGCAATCTCCATCGAC 98372 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 ||| ||| ||||||| ||||||||| ||||| || | | |||||||||| ||||| Sbjct 98373 GCCGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATTTGCGTGTTGAGCTTGCGAGCCTCG 98432 Query 213267 GGGGACGTGAAGGGCATCATCATGCGTTG-GAACACATCAGCCAGCCCCTGGACCCCGAT 213325 | ||| || ||||| | ||| ||| |||| ||||| |||||||| || | Sbjct 98433 GCCGACTCAAAAGGCATGCGAA-GCGCCAAGAAGGCATCCGCCAGGCCCTGGACACCAAC 98491 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 || || || | ||| | || ||| || | || ||| || |||||| |||| Sbjct 98492 ACCAATAGGGCGGTGGCGCATGTTGCTGTTCTGCGC-CTCGGGCACGGGGTAGTGGTTGA 98550 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444 ||| ||||| ||| |||||||| | || |||||||| | | ||| | || | Sbjct 98551 CGTCAATGATGCGGTTCAGGTTGCGCACAACTACCTTGGTGACCTCGTGCAGCTTCTGGA 98610 Query 213445 GATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGC 213504 | | || ||| || | |||||| ||||| || | |||||||||| Sbjct 98611 AGTCGTACTCGTTCTTGTTGTAGTCGACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGC 98670 Query 213505 AAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATC 213564 | ||||| ||||| | | | |||||| || ||||| |||||||||||| || | Sbjct 98671 ACACGGCAACCTCATCCGGCGCACAGTACTCGATAATCTCCGTGCACAGGTTGGAGCTGC 98730 Query 213565 GGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTGTAGAGCATG 213623 |||||||||||||||||| ||||| ||| ||| | |||| |||||||| |||||| Sbjct 98731 GGATGGTGCCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGTGGTCCTTGTACAGCATG 98789 Query 213624 TAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTG 213683 | ||| || ||||| ||| | | |||| || | ||| || | | ||||||| Sbjct 98790 AACGGGTTGCCAGTCTCGGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTTG 98849 Query 213684 ACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCG 213743 | | || ||| || | | | |||||||| |||||| ||| | | || || Sbjct 98850 ATCGAG-GCACGACCGCGGCCCTCCTG--CTCGTACTTTTCGTACAGCGCCTCAAACTCC 98906 Query 213744 TGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG 213803 | ||| || | |||| || || || ||| ||||| || ||||||| || Sbjct 98907 TCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCAGCG 98966 Query 213804 T-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCT 213862 | | |||| ||| | || |||||||||||| |||| |||||| || ||| || || | Sbjct 98967 TTCTTCTC-GACACGCTTCATGAACAGGTCAGGGATCCACAGAGCCAGGAAAAGATCACG 99025 Query 213863 GGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGC 213922 || | ||| ||| || ||| |||||||| || || || ||||| | || || Sbjct 99026 GGCGCGAACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCGGC 99085 Query 213923 GTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCAC 213979 |||||||||||||| ||| ||||||||||| || | || | ||||| |||||||| || Sbjct 99086 GTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGAC 99145 Query 213980 CAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTT 214039 | ||| |||| || | ||||| | ||| | | |||||||| ||||| Sbjct 99146 GTAGCGGGCAGTGTTGTTAAACACACGCAGCATGGGAATGATGCCGTTGGAGGTACCGTT 99205 Query 214040 GGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGAGAGCCCTATGCCA 214097 ||| || || || |||||||| | ||| | | | || ||| |||| || || ||| Sbjct 99206 GGTGCCGGCAATGTACGAGCCCGTGGCGCGGATGCGGTGGACATTGAGA--CCGATACCA 99263 Query 214098 CCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTG 214157 || || |||||||||||| || ||| | | | || || ||||| | || | Sbjct 99264 CCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCGTAAATGCCCTCAATCGAG 99323 Query 214158 TCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTG 214217 || || | | || | || |||||| ||| ||||||| | || || |||| |||| Sbjct 99324 TCCTCCTTCATGTCGACCAGGAAGCAAGACGACAGCTGGGCCTGGGGCGTACCAGCGTTG 99383 Query 214218 AAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGG 214277 || |||||||| ||||||| | | |||||| | || | ||| |||| ||||| | | Sbjct 99384 AACAGCGTGGGCGAGGCATGGGTGAAGAACTTGCTCGACATGAGGTTGTACGTCTCAATG 99443 Query 214278 AC-TGA--GGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTG 214333 || || | ||||| | ||| | ||| ||| | ||| | ||||||||| Sbjct 99444 ACGCGATCGACTCTGTCGCCC---CAGATGCCAACAGC-CACACGCATAATCATGTGCTG 99499 Query 214334 GGGCCTCTCTATGGGTCCTTTGGGGCC--CTTGAGCAGGTAGGAGCGCTCCAGAGTCTTG 214391 ||| | ||| | ||| | || ||| | |||||| ||||||||||| |||||| Sbjct 99500 GGGACGCTCGA--CAATCTTGCCGTCCAGCTTCAACAGGTACGAGCGCTCCAGGGTCTTG 99557 Query 214392 AACCCAAAGTA 214402 || |||||||| Sbjct 99558 AAGCCAAAGTA 99568 >seq18 Length=597235 Score = 219 bits (242), Expect = 8e-52 Identities = 565/853 (66%), Gaps = 32/853 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | |||||||||||||| ||||| || | | |||||||||||| Sbjct 244074 CTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGCGAGATGTTCTC 244133 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC--AGGCCCATCTGTTC 47952 ||| ||| |||||||| | | | || ||| ||| | ||| ||| | Sbjct 244134 CATAAAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTTTCGTTGCCGAGGGCCA------C 244187 Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 |||||| | || ||||| |||| ||||| | ||||||| | ||||||||| | Sbjct 244188 CAGCAGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAG 244247 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 |||| ||||| |||| || || ||||||||||| || ||||| || | Sbjct 244248 CAGGGCGCAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCATCAGTGAT 244307 Query 48073 AATCTGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCAT 48129 || | || || | | || ||| || | ||||| ||||||| | |||||| Sbjct 244308 GATTTCCTCAATGAGCTTCTTGCTGGGGCGGTTGTT---CAGGTGCGAGA---AGAGCAG 244361 Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 |||||||||||| |||||| ||| ||||| || || ||| ||||||| ||| || Sbjct 244362 GCAGGCAAAGTCGGTGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTGGAAAAGGTCAG 244421 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 || ||||| | || | || ||||||||||| | || || | ||| |||||||| Sbjct 244422 GCCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCAAAGGCGCCGGAGAAGAA 244481 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||||||||| || || || || || || | || | || | | | | ||| | Sbjct 244482 GATGCCCTCGACGGCGGCAAAGGCCACCAGGCGCTGGGCAAAGGTCGACTCGTGGTCGGC 244541 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 ||||| || |||||||| ||||| |||||| || || || || ||||| Sbjct 244542 AATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATGGTGTCGATGGCGTT 244601 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAG---TGAGCAGCTTTGCGTA 48426 ||| || | ||| || | | ||| | || || |||||||| | ||| Sbjct 244602 GAACAGGTAGCTGCGCTGGGCGGGCTCCTTGATGTACGTGTCGATGAGCAGC---GAGTA 244658 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 | |||| ||||| | ||||| || ||||||||| ||||||||| | ||||||| Sbjct 244659 CGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGG 244718 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 | ||| || || ||||| | ||| | ||| ||||| ||||| || |||||||| || Sbjct 244719 GATCTGGACCTCGCCTGAGAAGCGCTCAACCAGGTTCTCGTTGACAATGCCATCTGAGGC 244778 Query 48547 AGCAAAGAAGGCAAGGACATGT----TTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 ||||||||||| ||||| || | ||| | | || || |||| || | | Sbjct 244779 GGCAAAGAAGGCGAGGACGTGCGAGATGAAGTACTTTTCG-TCCTTGTTCATGCGGTTGT 244837 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 ||||| | || | || ||| ||| || | || || | |||||||||||||| | Sbjct 244838 TCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAGGACGCCTCGG 244897 Query 48663 CTTTTTTGTACAT 48675 | || |||||||| Sbjct 244898 CCTTCTTGTACAT 244910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531915043840