Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq53 324 3e-83 seq18 246 6e-60 >seq53 Length=159929 Score = 324 bits (358), Expect = 3e-83 Identities = 968/1472 (66%), Gaps = 45/1472 (3%) Strand=Plus/Plus Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTC 221472 |||||| |||||||||||||||||||||||||| | ||||||| |||| ||||| Sbjct 98375 CGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATTTGCGTGTTGAG---CTTGCGAGCCTC 98431 Query 221473 GGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 || || || ||||| || ||| | ||| | || ||||| ||||| || || | Sbjct 98432 GGCCGACTCAAAAGGCATGCGAAGCGCCAAGAAGGCATCCGCCAGGCCCTGGACACCAAC 98491 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 ||| || || | ||| | | ||||| ||| || |||||||| || |||||| Sbjct 98492 ACCAATAGGGCGGTGGCGCATGTTGCTGTTCTGCGCCTCGGGCACGGGGTAGTGGTTGAC 98551 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 ||| || | ||| ||||| | | || || |||||| |||||||||| Sbjct 98552 GTCAATGATGCGGTTCAGGTTGCGCACAACTACCTTGGTGACCTCGTGCAGCTTCTGG-- 98609 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 || | ||||| || || | || ||||| | || || | Sbjct 98610 ----AAGTCGTACTCGTTCTTGTTGTAG------TCGACAAACGACGGCAGAGCCAGCGA 98659 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||||| |||||||| ||||| ||| |||| || ||||| || || || Sbjct 98660 AGCCAGGTTGCACACGGCAACCTCATCCGGCGCACAGTACTCGATAATCTCCGTGCACAG 98719 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCT 221831 |||| || |||||| ||||||| || || || |||||| ||| ||| | |||| Sbjct 98720 GTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCT 98778 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||| ||||| || || ||||||||| ||| ||| ||||||| || ||| || | Sbjct 98779 TGTACAGCATGAACGGGTTGCCAGTCTCGGTCTGCGCCTCCAGAATGGCGTACCACAGCT 98838 Query 221892 CTCTGGCGCTC-ACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTATAGAG 221949 ||||| || | || | ||| || ||||| || || ||| || || Sbjct 98839 -TCTGGGCCTTGATCGAGG-CACGACCGCGGCCCTC---CTGCTCGTACTTTTCGTACAG 98893 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | ||||||| || ||||| ||| ||||||| || ||| | ||| |||||||| Sbjct 98894 CGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATCAG 98953 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 | |||||| ||| | | ||| | || |||||| ||||| ||||||||||| ||| | Sbjct 98954 AGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAACAGGTCAGGGATCCACAGAGCCAG 99013 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 || ||||| | || || ||| ||| ||||| ||| || | ||| || | ||||| Sbjct 99014 GAAAAGATCACGGGCGCGAACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTC 99073 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 ||| | || ||||||||||||||||| || | ||| | || ||||| ||||||||||| Sbjct 99074 AAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTGCC 99133 Query 222190 ACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 |||||| || | | | ||| | ||| || | || || | || | | |||| Sbjct 99134 ACCCTGGTCGA-CGTAGCGGGCAGTGTTGTTAAACACACGCAGCATGGGAATGATGCCGT 99192 Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACA 222308 |||| |||||||||||| |||||||| || ||| | || | | || |||| Sbjct 99193 TGGAGGTACCGTTGGTGCCGGCAATGTACGAGCCCGTGGCGC---GGATGC-GGTGGACA 99248 Query 222309 T----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 | ||||||||||| || || |||||||| || ||| ||||||| || || Sbjct 99249 TTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCGTAA 99308 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424 |||||||| || ||||||||||| | || | ||| || |||||||||| ||| | | | Sbjct 99309 ATGCCCTCAATCGAGTCCTCCTTCATGTCGACCAGGAAGCAAGACGACAGCTGGGCCTGG 99368 Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484 | | || ||||| ||||||||||| ||| || || ||| | || ||||| || Sbjct 99369 GGCGTACCAGCGTTGAACAGCGTGGGCGAGGCATGGGTGAAGAACTTGCTCGACATGAGG 99428 Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCAT 222543 | ||||||||| | ||| | ||| |||| ||| || | | | || | ||| Sbjct 99429 TTGTACGTCTCAATGACGCGATCGACTCTGTCGCCCCAGATGCCAACAGCCACA-CGCAT 99487 Query 222544 GTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTT 222601 ||||| |||||| | ||| ||| || | |||| | ||||||||| Sbjct 99488 AATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCCAGCT--TCAACAGGTACGAGCGC 99545 Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCG 222661 ||||| |||||||| |||||||| | | || ||||| | | ||| || | ||| | | Sbjct 99546 TCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAATGGCAGAG 99605 Query 222662 TCCAGCTCCGACTTGTGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCG 222721 ||||||||| |||||| | | | ||||| | || || | | ||| | | Sbjct 99606 TCCAGCTCCTCCTTGTGGCGCATGATGCACTCGTACGTCTCCTTGGAGATCATGGGCGAG 99665 Query 222722 TTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGAGAAC-GT 222780 || | || | ||||| |||| ||||||||| | | ||| | || || | Sbjct 99666 GCCTTGCGGTTGGCAGGGTTGACGTAGTGGTACAGATCCGACACCACCGACGACCACTGC 99725 Query 222781 GTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCATAGTC 222840 || | ||||||||||| || || |||||||| || || | |||| || | ||||| Sbjct 99726 TTCTTG-GTCTGCTTGTGGAGGTTGGACACGGCAATACGGGCAGCCAGAATGGCGTAGTC 99784 Query 222841 AGGGTGCACGGTGGTCATGCTGGCTAGGGTCT 222872 ||||| | ||||||| ||| ||||| Sbjct 99785 GGGGTGGGTGACGGTCATGTAGGCAGCGGTCT 99816 Score = 104 bits (114), Expect = 4e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||||| | | |||||| | ||| ||||| |||| Sbjct 98084 GTTGACAACCTGGAACTCGCCAGCCAGCACACGGCGCTGGTAAATGTTGGAAGTATACGG 98143 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | ||||||||| || ||||| || || | Sbjct 98144 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAG 98203 Query 221236 CAGCAGACTGTTGCGCA 221252 |||||| |||||||| Sbjct 98204 CAGCAGCGAGTTGCGCA 98220 >seq18 Length=597235 Score = 246 bits (272), Expect = 6e-60 Identities = 575/859 (67%), Gaps = 28/859 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||| ||||| |||||||||||| Sbjct 244919 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGATTGATCTG 244860 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCT-ATC--CAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | || ||| ||||| || | || || | Sbjct 244859 TCCAAGGATCTCCACGACTGGAACAACCGCATGAACAAGGACGAAAAGTACTTCATCTCG 244800 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || |||||||| ||||| ||||| || || |||||||| ||| ||| | Sbjct 244799 CACGTCCTCGCCTTCTTTGCCGCCTCAGATGGCATTGTCAACGAGAACCTGGTTGAGCGC 244740 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| | | || || ||| | |||||| || |||||||| |||||||| || Sbjct 244739 TTCTCAGGCGAGGTCCAGATCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATG 244680 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| ||| | ||| || || |||||||| | || | Sbjct 244679 GAGAACATCCACTCCGAGACGTACTC---GCTGCTCATCGACACGTACATCAAGGAGCCC 244623 Query 25771 GCCGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||| || | || | ||||| |||||||| ||| ||| ||||| | ||||| Sbjct 244622 GCCCAGCGCAGCTAC-CTGTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAAGGC 244564 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||| | |||||||| | ||| ||| | || |||| | |||| ||||| | Sbjct 244563 CGACTGGGCCCTCAAGTGGATTGCCGACCACGAGT-CGACCTTTGCCCAGCGCCTGGTGG 244505 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT-- 25946 ||||||| || || ||||||||||| ||| ||| | ||||| |||| |||||||| Sbjct 244504 CCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTCTGGCTGC 244445 Query 25947 -CAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 ||||| | || | |||||||| ||| ||||||||||||||| || | ||| Sbjct 244444 GCAAGC----GTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGAC 244389 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 ||||| || |||| || |||||||||||||||| | || ||| || | || || Sbjct 244388 GAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCG---CACCTGAACAAC-CGCCC 244333 Query 26065 TCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCN 26123 |||| || | | | ||||||| || || || | || ||||||||||| | Sbjct 244332 CAGCAAGAAGCTCATTGAGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCT 244273 Query 26124 NNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACAT 26183 | ||||||||| | ||||||| || ||||| Sbjct 244272 GACTGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACAT 244213 Query 26184 TGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC 26242 ||||| ||| ||||||| |||||| ||| | || || || | ||||| | | Sbjct 244212 TGAGTTTGTCGCCGACCGTCTGCTGGTGGC-CCTCGGCAACGAAAAGGTCTACCGCTCCA 244154 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 | ||||| || ||||||||||| ||||| ||| | | || ||||||||||||||||| | Sbjct 244153 CGAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGA 244094 Query 26303 AGAGGGTCGGCGACTATCA 26321 || | || |||||||| || Sbjct 244093 AGCGTGTTGGCGACTACCA 244075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843917597440