Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq36 302 6e-77 seq20 188 9e-43 seq40 187 3e-42 seq5 179 5e-40 seq15 145 1e-29 >seq36 Length=308131 Score = 302 bits (334), Expect = 6e-77 Identities = 558/818 (68%), Gaps = 3/818 (0%) Strand=Plus/Plus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 || || ||||| || | ||||| || || |||||||| || ||||| ||||| | || Sbjct 257355 GCCCTGCGTCGTCTCCGCACTGCCTGCGAGCGTGCCAAGCGCACTCTGTCTTCGTCTGCC 257414 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 || || ||||||| || || |||| || || || |||||||| || | || || Sbjct 257415 CAGACCTCCATTGAGATCGACTCCCTGTTCGAGGGTATCGACTTCTACACCTCCATCACT 257474 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 ||||| ||||| || ||| | | || |||| | | || | || ||||| Sbjct 257475 CGTGCCCGTTTCGAGGAGCTGTGCCAGGACCTGTTCCGCTCGACCCTGCAGCCCGTTGAC 257534 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || || ||| || ||||| || |||||| ||| | || |||||||| || || Sbjct 257535 CGTGTCCTGACTGATGCCAAGATTGACAAGTCTCTGGTCCACGAGATTGTCCTGGTCGGT 257594 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 || || ||||||||||| || || || | |||| || |||||| || || Sbjct 257595 GGTTCCACCCGTATTCCCCGCATCCAGAAGCTCATTTCCGACTACTTCAACGGCAAGGAG 257654 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 ||||| | |||||||| ||||| || ||||| || ||||| ||||| ||||| ||| Sbjct 257655 CCCAACAAGAGCATCAACCCTGATGAGGCCGTTGCCTACGGTGCCGCCGTCCAGGCCGCT 257714 Query 196421 ATTCTCTCAGGTG---TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCA 196477 || || || |||| | ||| || | | | | || | ||||| || ||||| || Sbjct 257715 ATCCTGTCTGGTGACACTTCCAACAAGACCACCAACGAGATCCTGCTGCTGGATGTCGCT 257774 Query 196478 CCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAAC 196537 || | ||||||||| |||| || || |||||| | ||||| || | ||| | ||| Sbjct 257775 CCTCTGTCCCTGGGTATTGAGACTGCCGGTGGTATGATGACCAAGCTGATTCCCCGCAAC 257834 Query 196538 ACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGT 196597 || || || || || |||||| | ||||| || || | || || || || || ||| Sbjct 257835 ACCACCATCCCCACCAAGAAGTCGGAGGTCTTCTCCACCTTCTCGGACAACCAGCCCGGT 257894 Query 196598 GTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGA 196657 || | ||||| || || || || || ||| || | ||||| ||| | || || || Sbjct 257895 GTCCTGATTCAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTGCTGGGC 257954 Query 196658 ACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGC 196717 | ||||| | || || || || |||| ||| | |||||||| |||||| | || | Sbjct 257955 AAGTTCGAGCTCACTGGTATCCCCCCTGCCCCCCGTGGTGTTCCCCAGATTGAGGTCACC 258014 Query 196718 TTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAA 196777 ||||| | || || || || || | |||||| | ||| ||| |||| | | ||||| Sbjct 258015 TTCGACCTGGATGCCAACGGTATCATGAACGTCTCGGCTCTGGAGAAGGGTACCGGCAAG 258074 Query 196778 TCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGT 196837 || | |||||||| || ||||| |||||||| || || || |||||||| ||||| || Sbjct 258075 TCCAACAAGATTGTCATCACCAACGACAAGGGCCGTCTGTCCAAGGAGGACATTGAGCGC 258134 Query 196838 ATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 ||| || || || || ||||||| ||| || || || Sbjct 258135 ATGCTTTCCGAGGCCGAGAAGTACAAGGAGGAGGATGA 258172 Score = 208 bits (230), Expect = 1e-48 Identities = 285/398 (72%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 195584 AAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATT 195643 ||||| || ||| | || || || | ||||||| || || || |||| || || || Sbjct 256762 AAGCCCATCATTCAGGTCGAGTTCAAGGGTGAGACCAAGCAGTTCACTCCTGAGGAGATC 256821 Query 195644 TCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTG 195703 || || ||||| ||| |||||| ||||| || || || | | |||||| | || Sbjct 256822 TCCTCCATGGTCCTGACCAAGATGCGTGAGACCGCTGAGTCGTACCTGGGTACCAGCGTT 256881 Query 195704 AAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAG 195763 || | || || || ||||| || || ||||||| ||||| || || ||||| || ||| Sbjct 256882 AACAACGCCGTCGTCACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAGGCCACCAAG 256941 Query 195764 GACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCT 195823 ||||| | | |||||| ||||| ||| ||| | || ||||| || || || || ||| Sbjct 256942 GACGCCGGTCTTATTGCCGGTCTTAACGTTCTGCGTATCATCAACGAGCCCACTGCTGCT 257001 Query 195824 GCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGAT 195883 || ||||| || ||||| |||||||| || | || || || ||||||| ||| Sbjct 257002 GCCATTGCCTACGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGAT 257061 Query 195884 CTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTA 195943 || ||||||||||| || |||||||| || || | ||||| | |||||| || || || Sbjct 257062 CTGGGTGGTGGTACTTTCGATGTCTCTCTGCTGACCATTGAGGATGGTATCTTTGAGGTC 257121 Query 195944 AAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGA 195981 ||| | || |||||||| || || || |||||||| || Sbjct 257122 AAGTCCACCGCTGGTGACACCCACCTGGGTGGTGAGGA 257159 >seq20 Length=554927 Score = 188 bits (208), Expect = 9e-43 Identities = 413/612 (67%), Gaps = 15/612 (2%) Strand=Plus/Minus Query 195382 AGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGA 195441 ||| ||||||| ||||| || ||||| ||||| || || | || ||||| ||||| || Sbjct 85866 AGGTAACCGTATCACTCCTTCCTACGTCGCCTTCACCGAGGAGGAGCGTCTGGTTGGTGA 85807 Query 195442 TGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCT 195501 ||||| || || ||| | | |||||||| ||| || ||||| ||| |||||||| Sbjct 85806 CGCCGCCAAGAACCAGGCCCCCGCGAACCCTACCAACACCGTCTTCGACATCAAGCGTCT 85747 Query 195502 TATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGA 195561 ||||| |||||||| || ||| | |||| | ||| || ||| ||| | || | Sbjct 85746 AATTGGCCGCAAGTTCAACGAGAAGGAGCTCCAGGCCGACATCAAGCACTTCCCCTACAA 85687 Query 195562 AGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGG-TGAGAAGA 195620 ||||| | || || ||||| | | || ||||| | | || | | | Sbjct 85686 GGTTGTCAACAA---GGATGGCAAGCCCTTTGTCAAGGTTGAGTACAAGGGCTCCGCCAA 85630 Query 195621 AACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGG 195680 || | | ||||||| || | || | ||| | || |||||||||| ||| | Sbjct 85629 GACCTTCT-CTCCCGAGGAGGTCTCTGCCATGATCCTGGGCAAGATGAAGGGTGTTGCCG 85571 Query 195681 AATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTG 195740 | | | | |||| || || || | | || || || || || ||||| ||||||| | Sbjct 85570 AGGCCTACCTGGGCAAGACCGTCACCCACGCCGTCGTCACCGTCCCTGCCTACTTCAACG 85511 Query 195741 ATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAA 195800 | | || || ||||| || |||||||| | | | ||||| ||||| ||| || | | Sbjct 85510 ACGCCCAGCGTCAGGCTACCAAGGACGCCGGTACCATTGCCGGTCTGAACATCCTCCGTA 85451 Query 195801 TTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAG 195860 || |||| || || || || || || |||||||| ||||||||||||| | |||| | Sbjct 85450 TTGTCAACGAGCCCACCGCCGCCGCCATTGCTTACGGTCTGGACAAGACC---GACGCTG 85394 Query 195861 ATAA-----AAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCT 195915 | | | || |||| ||| ||||| ||||||||||| || ||||| || || || Sbjct 85393 GTGAGCGCCAGAT-CATTG-TCTACGATCTGGGTGGTGGTACCTTCGATGTGTCTCTGCT 85336 Query 195916 CAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGG 195975 ||||| | ||| | || || || ||| ||||| ||||| || || || ||||| Sbjct 85335 GTCCATTGAGAGCGGTGTCTTTGAGGTTCTGGCCACTGCCGGTGACACCCACCTGGGTGG 85276 Query 195976 TGAAGATTTCGA 195987 ||| |||||||| Sbjct 85275 TGAGGATTTCGA 85264 >seq40 Length=249150 Score = 187 bits (206), Expect = 3e-42 Identities = 515/780 (66%), Gaps = 17/780 (2%) Strand=Plus/Minus Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||||| ||| || | || || || | || | | || || | || | Sbjct 99330 AGATGAAGGAGATTGCCGAGGCCAAGATCGGCAAGAAGGTCGAGAAGGCTGTCATCACCG 99271 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || || ||||||| || || || ||||| || |||||||| | ||| ||||| | Sbjct 99270 TCCCCGCCTACTTCAACGACAACCAGCGTCAGGCTACCAAGGACGCCGGTGCCATTGCTG 99211 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 | || ||| ||| | || ||||| || || || || ||||| || || || ||||||| Sbjct 99210 GCCTGAACGTTCTGCGTATCATCAACGAGCCTACTGCCGCTGCCATCGCCTACGGTCTGG 99151 Query 195843 A--CAAG-AACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGT 195899 | | || ||| | || || || |||||| ||||| ||||||||||| | Sbjct 99150 GTGCTGGTAAGTCGGAGAAGGAGCGCAACGTCCTGATCTACGATCTGGGTGGTGGTACTT 99091 Query 195900 TTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959 | |||||||| || || || || | |||||| | ||| || |||||||| ||||||| Sbjct 99090 TCGATGTCTCCCTGCTGAACATCCAGGGTGGTGTCTTCACCGTCAAGGCTACCGCTGGTG 99031 Query 195960 ATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-ATGAG 196018 | ||||| || |||||| | || ||||| | || || | | || | | || Sbjct 99030 ACACTCACCTGGGTGGTCAGGACTTCGACACCAACCTGCT-GGACTACTGCAAGAAGGAC 98972 Query 196019 TTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGG 196078 ||| || |||| ||||| ||| | ||||| || | | || || ||||| || | Sbjct 98971 TTCACCCGCAAGACCAAGAAGGATCTGTCTGGTGATGCCCGTGCCCTGCGTCGTCTCCGT 98912 Query 196079 ACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATT 196138 || || || || |||||||| || || || ||||| ||||| || | |||||||| Sbjct 98911 ACCGCTTGCGAGCGTGCCAAGCGTACCCTGTCTTCCGGTGCTCAGACCACCATTGAGATT 98852 Query 196139 GATTCGTTGTTTGACGGAATTGACTT--CTATACAACTATTACCCGTGCACGTTTTGAAG 196196 || | | || ||||| ||||| || | || || |||||||| ||||| || | Sbjct 98851 GACACTCTCTTCGACGGTGAGGACTTCACTGTCCA--GATCACCCGTGCCCGTTTCGAGG 98794 Query 196197 AGTTAAACTCTGA----TTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 || | ||||| | || | | || | | |||| || |||| || || Sbjct 98793 AGCTGAACTCCAAGGCCTTCGCT--GGCA--CTCTGGAGCCCGTTGCCTCGGTCCTGAAG 98738 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||||| | || ||| |||| || || || ||||| || || || || |||||| Sbjct 98737 GACGCTGGCCTCGACAAGAAGCAGGTCGACGAGATCGTCCTGGTCGGTGGTTCCACCCGT 98678 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 || || ||||| || || |||| ||| |||||||| || | | | || | Sbjct 98677 ATCCCCAAGATCCAGAAGCTGCTGTCTGATTTCTTCAACGGCAAGAAGCTGGAGAAGTCC 98618 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 |||||||| ||||| || || || || ||||| ||||| ||||| | ||| || || ||| Sbjct 98617 ATCAACCCCGATGAGGCCGTCGCCTACGGTGCCGCCGTCCAGGCCGGTATCCTGTCGGGT 98558 >seq5 Length=956377 Score = 179 bits (198), Expect = 5e-40 Identities = 179/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| |||||||| || || || ||||| || || || || || |||||||||| Sbjct 899636 GTGGTATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATTACGCTGGAGGTTGAGT 899577 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| || || || || ||| |||| |||||||||| || ||||| || ||||| || | Sbjct 899576 CGTCGGATACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCTG 899517 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || || || ||||||||||| ||||| || || || || || ||| | || | Sbjct 899516 ACCAGCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTCTCCGACT 899457 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| | || |||||||| ||||| ||| | ||||| | || || ||||| Sbjct 899456 ACAACATCCAGAAGGAGTCGACTCTGCACTTGGTTCTGCGTCTGCGTGGTGG 899405 Score = 168 bits (186), Expect = 9e-37 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| |||||||| || || ||||| || || || || || || ||||| |||| Sbjct 899864 GTGGTATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATTACTCTGGAGGTGGAGT 899805 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| || || || | || | |||||||| || ||||| || || || || | Sbjct 899804 CATCCGACACCATTGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGG 899745 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || || ||||| || || || ||||| || || || || || ||| | || | Sbjct 899744 ACCAGCAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCGGACT 899685 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| |||| |||||||||||||| ||||| ||||| | ||||| |||||| Sbjct 899684 ACAACATTCAGAAGGAGTCTACTCTTCACCTGGTTCTCCGTCTTCGTGGTGGT 899632 Score = 168 bits (186), Expect = 9e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| || || || || ||||||||||| || |||||||| || || ||||| Sbjct 900075 GTCAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCGTCGGATACCATCGAC 900016 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || || ||||| |||||||| || |||||||| || || || Sbjct 900015 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATC 899956 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 |||||||| || |||||||| || || || || || |||| |||||| | || |||||| Sbjct 899955 TTTGCTGGCAAGCAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAGGAG 899896 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || ||||| || || | || || |||||| Sbjct 899895 TCCACCCTCCACCTGGTGCTTCGTCTCCGTGGTGGT 899860 >seq15 Length=634592 Score = 145 bits (160), Expect = 1e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || || ||||||||||||||||| || Sbjct 108655 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCG 108714 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| |||||||| || |||||| Sbjct 108715 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAG 108774 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || ||||| || ||||| || || || | || |||||| Sbjct 108775 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 108834 Query 172042 GTTCAAAAGG 172051 | || |||| Sbjct 108835 ATCCAGAAGG 108844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861775030720