Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq40 134 4e-26
seq53 113 1e-19
seq18 86.0 2e-11
seq11 86.0 2e-11
>seq40
Length=249150
Score = 134 bits (148), Expect = 4e-26
Identities = 167/226 (74%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651
|||||||||||| |||||||| | ||| || ||||| || ||||| ||||| ||||
Sbjct 60654 ACGACGCTGAATGTAACCAGTCTCGGCTGTCTTGACAGCAGTGTCAATAAGACCTTCACG 60595
Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCT 302710
|||| |||| || |||||||| | ||| | || || || || | | | | ||| |||
Sbjct 60594 ACCAGCCATGGCGTGGAAGAAGAACTCG-CTGGGAGTCAGGCCACGGAGATAAGAGTTCT 60536
Query 302711 CAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT 302770
||||||| ||||| |||||||| || | ||| |||||| ||||| ||||| || | ||
Sbjct 60535 CAACGAAGCCACGGGCCTCGGGGGAGTAATCGTCCTTGGTGAAGTGAGGCAGAGTGCGGT 60476
Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCC 302816
|| | ||| | ||||||||||| || || || |||| || ||
Sbjct 60475 ACTTGAATCCGAAGGGGATACGCTTACCCTCCACAATCTGTTGACC 60430
>seq53
Length=159929
Score = 113 bits (124), Expect = 1e-19
Identities = 470/735 (64%), Gaps = 15/735 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || | |||||| ||||||||| || || ||||||||| | |||||||||||
Sbjct 98696 GTACTCGATAATCTCCGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTT 98755
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| || |||||||| || ||| | ||| | || ||||| |||| ||
Sbjct 98756 GCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCGGTCTGCGC 98815
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTT--GCTTGTTGTATCTGCCTTCC 155807
|||||||| ||| || | |||| || || || | | ||| |||
Sbjct 98816 CTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGATCGAGGCACGACCG--CGGCCCTCC 98873
Query 155808 GACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
||| || || ||||||| | ||||| ||||| || || ||| ||||||
Sbjct 98874 TGCTCGTACTTTTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGG 98933
Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924
|||| | |||||| | ||| | ||| | || || ||| |||||| ||| ||
Sbjct 98934 CACTCGTTGGGGCACATCAGAGTCCAGTCAGCGTTCTTCTCGA---CACGCTTCATGAAC 98990
Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984
| ||| ||| | ||| |||||| || | || ||| || | ||||||
Sbjct 98991 AGGTCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCGCGAACCTCTTCCTTGCCGTGG 99050
Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044
||||| || || || | ||| || | ||| | || |||||||| || || |||
Sbjct 99051 TTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCA 99110
Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101
|| ||| | |||| |||||||| || || || || ||||| || || || |||
Sbjct 99111 AAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAACACA 99170
Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161
| ||||| ||||| || || ||||| || || ||||| ||| ||| | ||| || |
Sbjct 99171 CGCAGCATGGGAATGATGCCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAGCCCGTG 99230
Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCA 156220
| ||| | || | || || || |||||||| | |||| || || || ||| ||
Sbjct 99231 GCGCGGATGCGGTGGACATTGAGACCGATACCACCCG-CCATCTTGGAGATCATAGCACA 99289
Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280
||| | |||| | |||| || ||||| || || || | ||| | || ||||
Sbjct 99290 GGTCTTGAGGGTATCGTAAATGCCCTCAATCGAGTCCTCCTTCATGTCGACCAGGAAGCA 99349
Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340
|| | || | | || || ||||||||||| || || || | ||||| | ||
Sbjct 99350 AGACGACAGCTGGGCCTGGGGCGTACCAGCGTTGAACAGCGTGGGCGAGGCATGGGTGAA 99409
Query 156341 ATACTTATTAGACAT 156355
|||| | |||||
Sbjct 99410 GAACTTGCTCGACAT 99424
>seq18
Length=597235
Score = 86.0 bits (94), Expect = 2e-11
Identities = 234/353 (66%), Gaps = 4/353 (1%)
Strand=Plus/Minus
Query 133307 gAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366
|| ||||| ||| || || | ||||| |||||| || ||||| || || ||
Sbjct 244715 GAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACGTAC 244656
Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAACGC 133425
|| || || || || |||||||| || ||| |||| ||| | | || ||||||||
Sbjct 244655 TCGCTGCTCATCGACACGTACATCAAGGAGCCCGCCCAGC-GCAGCTACCTGTTCAACGC 244597
Query 133426 CATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGA-TCCAGG 133484
||| | |||| || || || | |||||||| | || |||| | | |
Sbjct 244596 CATCGACACCATTCCCTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAGTGGATTGCCGA 244537
Query 133485 ACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttt 133544
|| | || ||| ||||| || || || || ||||| | || |||||||| || |
Sbjct 244536 CCACGAGT-CGACCTTTGCCCAGCGCCTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCT 244478
Query 133545 tCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGT 133604
|| || || || ||| ||||| ||||| ||||||||| | | || || |||
Sbjct 244477 TCTCCGGCGCCTTTGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGCCTGA 244418
Query 133605 GTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
||||| ||||| || ||||| | ||||||| || |||||||| ||||||
Sbjct 244417 CCTTTTCCAACGAGCTGATTTCGCGCGACGAGGGCCTGCACACCGACTTTGCC 244365
>seq11
Length=758386
Score = 86.0 bits (94), Expect = 2e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332
|||||||| |||||||| ||||||||||||||||| || | |||||||||||| |||
Sbjct 435696 GCACCGTGGGCAATCATGCAATCACGTTCCATTTCTCCGAAACGCAGACCACCGTCACGC 435755
Query 233333 GACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAATT 233391
| | ||||| ||| | || || || | || | || | ||||| |||||||| |
Sbjct 435756 GCACGACCCTCGACGGGCTGGCGCGTCATAATCTGTAC-GGGACCACGAGCACGAGCGTG 435814
Query 233392 AATTTTATCTTTAACCATATG 233412
||| || || | ||||||||
Sbjct 435815 AATCTTGTCGTCCACCATATG 435835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471816166817612
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |