Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq40 134 4e-26 seq53 113 1e-19 seq18 86.0 2e-11 seq11 86.0 2e-11 >seq40 Length=249150 Score = 134 bits (148), Expect = 4e-26 Identities = 167/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 |||||||||||| |||||||| | ||| || ||||| || ||||| ||||| |||| Sbjct 60654 ACGACGCTGAATGTAACCAGTCTCGGCTGTCTTGACAGCAGTGTCAATAAGACCTTCACG 60595 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCT 302710 |||| |||| || |||||||| | ||| | || || || || | | | | ||| ||| Sbjct 60594 ACCAGCCATGGCGTGGAAGAAGAACTCG-CTGGGAGTCAGGCCACGGAGATAAGAGTTCT 60536 Query 302711 CAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT 302770 ||||||| ||||| |||||||| || | ||| |||||| ||||| ||||| || | || Sbjct 60535 CAACGAAGCCACGGGCCTCGGGGGAGTAATCGTCCTTGGTGAAGTGAGGCAGAGTGCGGT 60476 Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 || | ||| | ||||||||||| || || || |||| || || Sbjct 60475 ACTTGAATCCGAAGGGGATACGCTTACCCTCCACAATCTGTTGACC 60430 >seq53 Length=159929 Score = 113 bits (124), Expect = 1e-19 Identities = 470/735 (64%), Gaps = 15/735 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | |||||| ||||||||| || || ||||||||| | ||||||||||| Sbjct 98696 GTACTCGATAATCTCCGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTT 98755 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || |||||||| || ||| | ||| | || ||||| |||| || Sbjct 98756 GCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCGGTCTGCGC 98815 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTT--GCTTGTTGTATCTGCCTTCC 155807 |||||||| ||| || | |||| || || || | | ||| ||| Sbjct 98816 CTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGATCGAGGCACGACCG--CGGCCCTCC 98873 Query 155808 GACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || || ||||||| | ||||| ||||| || || ||| |||||| Sbjct 98874 TGCTCGTACTTTTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGG 98933 Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924 |||| | |||||| | ||| | ||| | || || ||| |||||| ||| || Sbjct 98934 CACTCGTTGGGGCACATCAGAGTCCAGTCAGCGTTCTTCTCGA---CACGCTTCATGAAC 98990 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984 | ||| ||| | ||| |||||| || | || ||| || | |||||| Sbjct 98991 AGGTCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCGCGAACCTCTTCCTTGCCGTGG 99050 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | ||| || | ||| | || |||||||| || || ||| Sbjct 99051 TTCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCA 99110 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || ||| | |||| |||||||| || || || || ||||| || || || ||| Sbjct 99111 AAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAACACA 99170 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | ||||| ||||| || || ||||| || || ||||| ||| ||| | ||| || | Sbjct 99171 CGCAGCATGGGAATGATGCCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAGCCCGTG 99230 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCA 156220 | ||| | || | || || || |||||||| | |||| || || || ||| || Sbjct 99231 GCGCGGATGCGGTGGACATTGAGACCGATACCACCCG-CCATCTTGGAGATCATAGCACA 99289 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 ||| | |||| | |||| || ||||| || || || | ||| | || |||| Sbjct 99290 GGTCTTGAGGGTATCGTAAATGCCCTCAATCGAGTCCTCCTTCATGTCGACCAGGAAGCA 99349 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 || | || | | || || ||||||||||| || || || | ||||| | || Sbjct 99350 AGACGACAGCTGGGCCTGGGGCGTACCAGCGTTGAACAGCGTGGGCGAGGCATGGGTGAA 99409 Query 156341 ATACTTATTAGACAT 156355 |||| | ||||| Sbjct 99410 GAACTTGCTCGACAT 99424 >seq18 Length=597235 Score = 86.0 bits (94), Expect = 2e-11 Identities = 234/353 (66%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 133307 gAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366 || ||||| ||| || || | ||||| |||||| || ||||| || || || Sbjct 244715 GAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACGTAC 244656 Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAACGC 133425 || || || || || |||||||| || ||| |||| ||| | | || |||||||| Sbjct 244655 TCGCTGCTCATCGACACGTACATCAAGGAGCCCGCCCAGC-GCAGCTACCTGTTCAACGC 244597 Query 133426 CATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGA-TCCAGG 133484 ||| | |||| || || || | |||||||| | || |||| | | | Sbjct 244596 CATCGACACCATTCCCTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAGTGGATTGCCGA 244537 Query 133485 ACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttt 133544 || | || ||| ||||| || || || || ||||| | || |||||||| || | Sbjct 244536 CCACGAGT-CGACCTTTGCCCAGCGCCTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCT 244478 Query 133545 tCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGT 133604 || || || || ||| ||||| ||||| ||||||||| | | || || ||| Sbjct 244477 TCTCCGGCGCCTTTGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGCCTGA 244418 Query 133605 GTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 ||||| ||||| || ||||| | ||||||| || |||||||| |||||| Sbjct 244417 CCTTTTCCAACGAGCTGATTTCGCGCGACGAGGGCCTGCACACCGACTTTGCC 244365 >seq11 Length=758386 Score = 86.0 bits (94), Expect = 2e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 |||||||| |||||||| ||||||||||||||||| || | |||||||||||| ||| Sbjct 435696 GCACCGTGGGCAATCATGCAATCACGTTCCATTTCTCCGAAACGCAGACCACCGTCACGC 435755 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAATT 233391 | | ||||| ||| | || || || | || | || | ||||| |||||||| | Sbjct 435756 GCACGACCCTCGACGGGCTGGCGCGTCATAATCTGTAC-GGGACCACGAGCACGAGCGTG 435814 Query 233392 AATTTTATCTTTAACCATATG 233412 ||| || || | |||||||| Sbjct 435815 AATCTTGTCGTCCACCATATG 435835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816166817612