Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq53 228 7e-55 seq5 109 5e-19 seq15 93.3 4e-14 >seq53 Length=159929 Score = 228 bits (252), Expect = 7e-55 Identities = 1064/1670 (64%), Gaps = 48/1670 (3%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAG-ATCACGAATATGTCGCGGTATTGTTGCAATATTTTG 138416 ||||||||||| |||||||| || ||| || ||| || || | | ||| || || Sbjct 97941 ATCTCCCACACCGTCTTGTACAGCATCTTGATGTCATCGGGG-ATGCTGGGAATGTTCTG 97999 Query 138417 AATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT 138476 || |||||| ||||||||||||| || |||||| ||| ||||| || | Sbjct 98000 GATCGACCCGTTCTCCGCAATGATGCGGTTCTTCATGTTATCCGACCACAGACCCAGGTC 98059 Query 138477 GATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACG 138536 | ||||||| | ||| | ||| | ||||| || || || |||| || || || Sbjct 98060 CACCAAGTCGCGCAGCAGCCACGGGTTGACAACCTGGAACTCGCCAGCCAGCACACGGCG 98119 Query 138537 AACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGT 138596 |||||||||| || | ||||| || | |||||||| ||||||||||| | ||| Sbjct 98120 CTGGTAAATGTTGGAAGTATACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGT 98179 Query 138597 GGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCG 138656 | | || |||||||| ||| | || || || || || | ||| || ||||||| | Sbjct 98180 GCTGGCCGTCGGCATCGGCGCAAGCAGCAGCGAGTTGCGCACACCATGCTGCTTGATCTG 98239 Query 138657 TTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 ||||||||||| | ||||||||| | ||||| || | ||||||||| || |||| Sbjct 98240 CTCCTTGAGCGATGCCCAGTCCCAGAGGTCGCTGGGCGTGACGTTCCACATGTCAAACTG 98299 Query 138717 TAACATTCCC----AAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTT 138772 | || ||| |||| ||| ||| ||||||| | ||| || ||| | Sbjct 98300 CAGAATGCCCTGGGAAACAGGCG----AGCCCTCGTACGTAGAGTACGTTCCCTCCTCCT 98355 Query 138773 GCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGAT 138832 |||| | ||| | |||| || ||| | | ||| || || || || ||| | Sbjct 98356 GCGCAATCTCCATCGACGCCGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATTTGCGTGT 98415 Query 138833 TGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCA 138892 ||||| || |||||||| ||| | |||||||| ||| | ||| || || |||| Sbjct 98416 TGAGCTTGCGAGCCTCGGCCGACTCAAAAGGCATGCGAAGCGCCAAGAAGGCATCCGCCA 98475 Query 138893 GCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG- 138951 | || || || || || || | |||||| |||||| || | | || |||| || | Sbjct 98476 GGCCCTGGACACCAACACCAATAGGGCGGTGGCGC--ATGTTGCTGTTCTGCGCCTCGGG 98533 Query 138952 -ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGT 139010 | || || | ||| || || ||||| ||| | || ||||| || ||||| || | Sbjct 98534 CACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTTGCGCACAACTACCTTGGT-GA 98592 Query 139011 ATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGAC-GACGTCGACAAAT 139068 | | | | | | || ||||| | | ||||| |||||| ||| || || | Sbjct 98593 CCTCGTGCAGCTTCTGGAAGTCGTACTCGTTCTTGTTGTAGTCGACAAACGACGGCAGA- 98651 Query 139069 TTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCG 139128 | | | ||| || | ||||||||| || || || || || | | ||| ||| Sbjct 98652 -----GCC----AGCGAAGCCAGGTTGCACACGGCAACCTCATCCGGCGCACAGTACTCG 98702 Query 139129 ACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTT 139188 | ||| || | |||| || | ||| || || | || | || ||||| || Sbjct 98703 ATAATCTCCGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTG 98762 Query 139189 CGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATA 139248 ||||| || || ||||| ||||| |||| ||||||| || || | ||| | | Sbjct 98763 CGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCGGTCTGCGCCTCCAGA 98822 Query 139249 ATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGCACG-TAAAGTTCGTCGCGCTCGTA 139307 ||| | ||| | | || | | | || ||||| | | || ||||||| Sbjct 98823 ATGGCGTACCACAGCTTCTGGGCCT-TGATCGAGGCACGACCGCGGCCCTCCTGCTCGTA 98881 Query 139308 CTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTC 139367 ||||||||| || | || || || |||||| ||| | || | | |||| || Sbjct 98882 CTTTTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTT 98941 Query 139368 AGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAAT 139427 || ||||| || | ||| | ||||| || ||| ||| |||||||||| || || || Sbjct 98942 GGGGCACATCAGAGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAACAGGTCAGGGAT 99001 Query 139428 CCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCAT 139487 ||||| ||| | | | ||| || || |||||| || ||| || Sbjct 99002 CCACAGAGCCAGGAAAAGATCACGGGCGCGAACCTCTTCCTTGCCGTGGTTCTTGCGCAG 99061 Query 139488 GTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTT 139547 || |||||| ||||| || || |||||||| || ||||| || ||||| | || || Sbjct 99062 GTCAAGGAACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGG 99121 Query 139548 CCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGG 139604 || |||||||| || ||||||| || ||| || || || || |||| ||| || Sbjct 99122 GCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAACACACGCAGCATGGG 99181 Query 139605 CTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCGAGCTCGGA 139660 | ||| | | || |||||||| || | | | | | | || ||| |||| Sbjct 99182 AATGATGCCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAGCCCGTGGCG----CGGA 99237 Query 139661 CGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGT 139719 | || ||||||| ||||| || || | | ||||| || | | | || || | Sbjct 99238 TGCGGTGGACATTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTG- 99296 Query 139720 AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAA 139779 | || ||||| || || || ||| |||| ||| |||||| ||||| ||||| Sbjct 99297 AGGGTATCGTAAATGCCCTCAATCGAGTCCTCCTTCATGTCGACCAGGAAGCAAGACGAC 99356 Query 139780 AGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGT 139839 || || | | ||| || || ||||| || || || || ||||| | | Sbjct 99357 AGCTGGGCCTGGGGCGTACCAGCGTTGAACAGCGTGGGCGAGGCATGGGTGAAGAACTTG 99416 Query 139840 TTCGACATCAATTCGTACGTTTCGATG--GCGCTC-ACAATATCCCTTCCGTGGATACCG 139896 ||||||| | | |||||| || ||| ||| || || | || || ||| || Sbjct 99417 CTCGACATGAGGTTGTACGTCTCAATGACGCGATCGACTCTGTC---GCCCCAGATGCCA 99473 Query 139897 ACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttC 139956 |||| || ||||| | ||| || ||| || ||| | | | ||| || | || | Sbjct 99474 ACAGCCACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCCAGCTTCAAC 99533 Query 139957 AGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || || | ||| ||||||||| ||||||||||| |||||||| || Sbjct 99534 AGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTC 99583 >seq5 Length=956377 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || |||||||| || || || | | Sbjct 899631 ATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATTACGCTGGAGGTTGAGTCGTCG 899572 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || || || || || Sbjct 899571 GATACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGACCAG 899512 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || ||||||||||| | | | || || || ||| Sbjct 899511 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTCTCCGACTACAAC 899452 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || |||||||| |||| |||| || ||| Sbjct 899451 ATCCAGAAGGAGTCGACTCTGCACTTGGTTCTGCGTCTGCGTGGTGGC 899404 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || ||||| || || || || | || Sbjct 899859 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATTACTCTGGAGGTGGAGTCATCC 899800 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 899799 GACACCATTGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 899740 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || ||||| || ||||| ||||| | | | || || || ||| Sbjct 899739 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCGGACTACAAC 899680 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| ||||| || || || ||| |||| Sbjct 899679 ATTCAGAAGGAGTCTACTCTTCACCTGGT 899651 >seq15 Length=634592 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || ||||| || ||||| ||||| || || || | Sbjct 108654 GATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 108713 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 108714 GGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCA 108773 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| || || || |||||||||||| | | |||| || || || Sbjct 108774 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 108833 Query 24883 CATTCAAAAGG 24893 ||| || |||| Sbjct 108834 CATCCAGAAGG 108844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897172597280