Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq27 120 2e-22 seq15 109 4e-19 seq5 107 1e-18 >seq27 Length=468876 Score = 120 bits (132), Expect = 2e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| |||| |||| || || ||||| || ||||||| Sbjct 115674 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 115733 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || |||||| Sbjct 115734 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 115793 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| || | ||| |||||||| ||||| |||||||| || | Sbjct 115794 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 115853 Query 34968 A 34968 | Sbjct 115854 A 115854 >seq15 Length=634592 Score = 109 bits (120), Expect = 4e-19 Identities = 153/211 (73%), Gaps = 9/211 (4%) Strand=Plus/Minus Query 34771 CAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAG 34830 || ||||| | |||| ||||||| ||||| ||||| || || |||| |||| ||||| Sbjct 108860 CATGTGAA-GCTGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAG 108802 Query 34831 TTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTAT 34890 ||||| || ||||||||||| || ||||| || | || | ||||||||||| | || Sbjct 108801 CTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGAT 108742 Query 34891 TTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || ||||| || | ||||| || || ||| || || | ||| || |||| Sbjct 108741 CTTGGACTTGAC--AT--TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCT 108686 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| |||||||| || || |||||||| Sbjct 108685 TACCCGTCAGGGTCTTGACGAAAATCTGCAT 108655 >seq5 Length=956377 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||||||||| |||||||| || |||| | || Sbjct 899648 AGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCC 899707 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| || || || |||||||| | || | ||||||||||| Sbjct 899708 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 899767 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | || | || | ||| || || | || |||||| Sbjct 899768 TGAATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTC 899827 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| |||||||||||||| Sbjct 899828 TTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || ||||||||| ||||| ||||| || || |||| | || Sbjct 899419 CAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTC 899478 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 899479 CTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTC 899538 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | ||| || || | || ||||| Sbjct 899539 CTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACCTCCAGCGTAATGGT 899598 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || || ||||| |||||||||||||| Sbjct 899599 CTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||||||||| ||||| ||||| || || |||| | || Sbjct 899876 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCC 899935 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || |||||||| || ||||| || | || | ||||||||||| Sbjct 899936 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCC 899995 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| || | ||| |||||| Sbjct 899996 TGGATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGGGTGATGGTC 900055 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || || || |||||||| || Sbjct 900056 TTGCCGGTCAGGGTCTTGAC 900075 Score = 89.7 bits (98), Expect = 3e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||| | |||| ||||||||| ||||| ||||| || || |||| | || Sbjct 900160 CAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 900219 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || |||||||| || ||||| || | || | ||||||||||| Sbjct 900220 CTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTC 900279 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | || || |||| ||| ||||| Sbjct 900280 CTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGATTCCACCTCAAGGGTGATGGT 900339 Query 34945 CTTTCCCGT 34953 ||| ||||| Sbjct 900340 CTTGCCCGT 900348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692498327044