Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq18 129 6e-25 >seq18 Length=597235 Score = 129 bits (142), Expect = 6e-25 Identities = 335/502 (67%), Gaps = 19/502 (4%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGAT---CGAGAGCGAGACCGCCACGCTGGCCGAGCGC 46832 |||||| | |||||| | |||||||| ||| |||| | || | ||| ||||| Sbjct 244568 AAGGCCGACTGGGCCCTCAAGTGGATTGCCGACCACGAGTCGACCT---TTGCCCAGCGC 244512 Query 46833 ATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTT 46892 ||||||| || || ||||| ||| | || || || ||| |||||| ||||||| Sbjct 244511 CTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTC 244452 Query 46893 TACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGC 46952 | | | || | ||||| |||||||| || |||||| |||| |||||| Sbjct 244451 TGGCTGCGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGC 244392 Query 46953 GACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAA 47011 ||||| || || ||||| |||||||| || || || || ||| | |||| | Sbjct 244391 GACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCT----CGCACCTGAACAACCG 244336 Query 47012 ATTAAACTCGGACACGATCCTGAGCATGT--TTAGGGAGGCGGTGAGCATCGAAAAGGAG 47069 | | | | || |||| | | | | || || || ||| || |||||| Sbjct 244335 CCCCAGCAAGAAGCTCAT--TGAGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAG 244278 Query 47070 TTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAA 47129 || | |||| ||| |||||| |||| |||| ||||||||||| | ||| | Sbjct 244277 TTCCTGACTGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAG 244218 Query 47130 TATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAAT 47189 || ||||||||||| || || |||||| ||||| ||||| ||| ||||| | || Sbjct 244217 TACATTGAGTTTGTCGCCGACCGTCTGCTGGTGGCCCTCGG-CAA-CGAAAAGGTCTACC 244160 Query 47190 GCTC--GTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTT 47247 |||| || || ||||| |||||| | ||||| ||||||| ||||| ||||| || | Sbjct 244159 GCTCCACGAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCT 244100 Query 47248 TCGAGAAACGAGTCGGAGAGTA 47269 | ||||| || || || || || Sbjct 244099 TTGAGAAGCGTGTTGGCGACTA 244078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610747219360