Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq18 129 6e-25
>seq18
Length=597235
Score = 129 bits (142), Expect = 6e-25
Identities = 335/502 (67%), Gaps = 19/502 (4%)
Strand=Plus/Minus
Query 46776 AAGGCCCAGTGGGCCATGAAGTGGAT---CGAGAGCGAGACCGCCACGCTGGCCGAGCGC 46832
|||||| | |||||| | |||||||| ||| |||| | || | ||| |||||
Sbjct 244568 AAGGCCGACTGGGCCCTCAAGTGGATTGCCGACCACGAGTCGACCT---TTGCCCAGCGC 244512
Query 46833 ATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTT 46892
||||||| || || ||||| ||| | || || || ||| |||||| |||||||
Sbjct 244511 CTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTC 244452
Query 46893 TACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGC 46952
| | | || | ||||| |||||||| || |||||| |||| ||||||
Sbjct 244451 TGGCTGCGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGC 244392
Query 46953 GACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAA 47011
||||| || || ||||| |||||||| || || || || ||| | |||| |
Sbjct 244391 GACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCT----CGCACCTGAACAACCG 244336
Query 47012 ATTAAACTCGGACACGATCCTGAGCATGT--TTAGGGAGGCGGTGAGCATCGAAAAGGAG 47069
| | | | || |||| | | | | || || || ||| || ||||||
Sbjct 244335 CCCCAGCAAGAAGCTCAT--TGAGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAG 244278
Query 47070 TTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAA 47129
|| | |||| ||| |||||| |||| |||| ||||||||||| | ||| |
Sbjct 244277 TTCCTGACTGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAG 244218
Query 47130 TATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAAT 47189
|| ||||||||||| || || |||||| ||||| ||||| ||| ||||| | ||
Sbjct 244217 TACATTGAGTTTGTCGCCGACCGTCTGCTGGTGGCCCTCGG-CAA-CGAAAAGGTCTACC 244160
Query 47190 GCTC--GTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTT 47247
|||| || || ||||| |||||| | ||||| ||||||| ||||| ||||| || |
Sbjct 244159 GCTCCACGAACCCCTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCT 244100
Query 47248 TCGAGAAACGAGTCGGAGAGTA 47269
| ||||| || || || || ||
Sbjct 244099 TTGAGAAGCGTGTTGGCGACTA 244078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476610747219360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |