Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3 102 1e-16 >seq3 Length=1108403 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 || ||||||| | ||| ||||||||||| |||| | |||| | | || ||| Sbjct 700641 TCGACGTGGTCGGCGTACACGTGCGCGTCGCCCATGACGTGCGTCAGGCTGCCGGGCACG 700582 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||| ||| | || | || | ||||| |||||||||||||| || ||||||||||| Sbjct 700581 AGGTCGGCCGCGCGCGCGAGCATGTGCGTGAGCAGCGAGTACGACGCAATGTTGAAGGGC 700522 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 || || ||||||||||| | ||| | |||||| |||||||| Sbjct 700521 ACGCCGAGGCCCATGTCGCACGAGCGCTGGTAGAGCTGGCA 700481 Score = 93.3 bits (102), Expect = 5e-14 Identities = 270/406 (67%), Gaps = 16/406 (4%) Strand=Plus/Minus Query 147105 CACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGG 147163 |||||||||||| ||| | ||||| ||||||||||||||||| |||||| || | Sbjct 700366 CACGTAAAACTGCGCAAAC-ATGTGACACGGCGGCAGCGCCATCTTCTTCAGGTCTGCCG 700308 Query 147164 GGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAA 147223 ||||||| || | | | || | | | || | |||| | || | | | Sbjct 700307 GGTTCCACGCGCTCATGATGATGCGTCGGTCGTACGGCGTGTTCTTCAGCTTGTGCACCA 700248 Query 147224 CCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCC-CGCAGTCCACGTACCTG 147282 | | ||||||||| ||||||||||| ||||| ||| |||| || || ||| | Sbjct 700247 CGTCCGCCAGCTGGTCGACGCCCTGGCCTGTGTAGTCGGTCTGCGCA-TCGACATACTCG 700189 Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || || || || | |||||||||||||||||| || ||||||||||| || | || Sbjct 700188 GCGCCGAAATGGCGCCACTGGAAGCCGTACACGGGGCCCAGGTCGCC-----CTCGGCGC 700134 Query 147343 GAGAAGCCC--GCC--CGC--TTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCC 147396 | | |||| ||| ||| | ||| || || | ||||||| | |||||||||| Sbjct 700133 G-GTGGCCCAGGCCGACGCTGTCGAGGTACGCGCGCGACCCGTTGCCGTCCCAGATCTTG 700075 Query 147397 ACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCC 147456 | || || |||| | || |||| |||| |||||||| |||||||| Sbjct 700074 ATGCCGGCCTCGCTGAGCGGCAGCGACGACGTGCTGCCCTCAATGAACCACAGCAGCTCG 700015 Query 147457 TCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGA 147502 | | ||| ||| | || || | ||| || |||||||| |||| Sbjct 700014 GCAATCACCGCCCGCGTGAACACGCGCTTCGTCGTCAGCAGCGGGA 699969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487445686400