Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18 217 2e-50 seq53 187 4e-41 seq7 118 2e-20 seq60 96.9 5e-14 seq2 86.0 9e-11 >seq18 Length=597235 Score = 217 bits (240), Expect = 2e-50 Identities = 361/512 (71%), Gaps = 22/512 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| ||||| ||||| ||||||||| | || | Sbjct 244920 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGATTGATC 244862 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| ||| | | ||||| | ||| Sbjct 244861 TGTCCAAGGATCTCCACG----ACTGGAACAACCGCATGAACAAGGACGAAAAGTACTTC 244806 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||||||||||||| ||| |||||| |||||||| || ||||||||||| Sbjct 244805 ATCTCGCACGTCCTCGCCTTCTTT-GCCGCCTCAGATGGCATTGTCAACGAGAACCTGGT 244747 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| |||||||| | || ||||| || | || ||||| |||||||| Sbjct 244746 TGAGCGCTTCTCAGGCGAGGTCCAGATCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGAT 244687 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || || |||||||| || |||||||| ||| ||||||| Sbjct 244686 CATGATGGAGAACATCCACTCCGAGACGTACTCGCTGCTCATCGACACGTACATCAAGGA 244627 Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || | | || | |||| || |||||||||||| | || | | | || Sbjct 244626 GCCCGCCCAGCGCAGCTACCTGTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAA 244567 Query 1456128 GGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184 |||||||||||| | |||||||| | || | ||| ||||| ||||||| |||| Sbjct 244566 GGCCGACTGGGCCCTCAAGTGGATTGCCGACCACGAG----TCGAC-CTTTGCCCAGCGC 244512 Query 1456185 CTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243 || || | |||||||| ||||||||||||||| ||||| ||| || | |||| || Sbjct 244511 CTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTC 244452 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||| || || |||||||| || Sbjct 244451 TGGCTGCGCAAGCGTGGTCTGATGCCCGGCCT 244420 Score = 131 bits (144), Expect = 2e-24 Identities = 228/325 (70%), Gaps = 10/325 (3%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||||||||| ||||||| | || | | | ||||| | | | | | Sbjct 244381 TGCACACCGACTTTGCCTGCCTGCTCTTCTCG---CACCTGAACAACCGCCCCAGCAAGA 244325 Query 1456512 TGCCCA---AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568 || || || | |||||| || ||||||| || ||||| ||||| | | ||| Sbjct 244324 AGCTCATTGAGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAGG 244265 Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 | ||||| || || |||||||||||||| | |||||| ||||||||||| ||| Sbjct 244264 CCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGAC-CTCATGAAGCAGTACATTGAGTTT 244206 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACC 1456688 ||||||||||| ||||| | ||| |||||| || | ||| |||||| | | |||| Sbjct 244205 -GTCGCCGACCGTCTGCTGGTGGCCCTCGGCAACGAA-AAGGTCTACCGCTCCACGAACC 244148 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 | || | |||||| |||||||||| |||||||||||||| || ||| || | Sbjct 244147 CCTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTG 244088 Query 1456749 -TGGCGAGTACGCCAAGGCCGGCGT 1456772 |||||| ||| |||||||| || Sbjct 244087 TTGGCGACTACCAGAAGGCCGGTGT 244063 >seq53 Length=159929 Score = 187 bits (206), Expect = 4e-41 Identities = 344/502 (69%), Gaps = 17/502 (3%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| ||||||| ||| ||| ||||| |||| ||||||| Sbjct 99622 CACAAGGAGGAGCTGGACTCTGCCATTGTGTACGACCGTGACTTCAACTACCAGTACTTT 99563 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801 || | |||| || || || |||||| || || || | | |||||||| Sbjct 99562 GGCTTCAAGACCCTGGAGCGCTCGTACCTGTTGAAGCTGGACGGCAAGATTGTCGAGCGT 99503 Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861 |||||| | ||| | |||||||| || ||||| | |||| ||||| Sbjct 99502 CCCCAGCACATGATTATGCGTGTGGCTGTTGGCA--TCTGGGG----------CGACAGA 99455 Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGC 259920 | | || | ||| | | || ||| | ||||||| |||| ||| |||||| || Sbjct 99454 G---TCGATCGCGTCATTGAGACGTACAACCTCATGTCG-AGCAAGTTCTTCACCCATGC 99399 Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980 |||||||||| || || || || ||||| | | ||| ||||| ||||| ||| | Sbjct 99398 CTCGCCCACGCTGTTCAACGCTGGTACGCCCCAGGCCCAGCTGTCGTCTTGCTTCCTGGT 99339 Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040 |||||||||| || ||||| |||||||| || || || |||||| || || | || Sbjct 99338 CGACATGAAGGAGGACTCGATTGAGGGCATTTACGATACCCTCAAGACCTGTGCTATGAT 99279 Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100 ||||||| ||| || || |||||| | | ||| | |||||| ||||| | || Sbjct 99278 CTCCAAGATGGCGGGTGGTATCGGTCTCAATGTCCACCGCATCCGCGCCACGGGCTCGTA 99219 Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 | | || ||||||||||| ||||||||| | | |||||||| || || |||||| | Sbjct 99218 CATTGCCGGCACCAACGGTACCTCCAACGGCATCATTCCCATGCTGCGTGTGTTTAACAA 99159 Query 260161 CACGGCGCGCTACGTCGACCAG 260182 ||| || ||||||||||||||| Sbjct 99158 CACTGCCCGCTACGTCGACCAG 99137 Score = 104 bits (114), Expect = 3e-16 Identities = 299/456 (66%), Gaps = 28/456 (6%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| || ||||||||| |||||||| |||||||||||||| | Sbjct 99136 GGTGGCAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCCGATGTG 99077 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | || ||||| |||||||||||||||| || || |||| || Sbjct 99076 TTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAAGAGGTTC------GCGCCCGT 99023 Query 261908 GATCTCTTTTACGGC-CTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCG 261966 ||||| ||| ||| ||||||| |||||||| ||| || | | || | || Sbjct 99022 GATCT-TTTCCTGGCTCTGTGGATCCCTGACCTGTTCATGAAGCGTGTCGAGAA-GAACG 98965 Query 261967 C-GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025 | |||||| | || | ||||| |||| || |||||| ||| ||||| |||| || Sbjct 98964 CTGACTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGG 98905 Query 262026 CCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCC-C 262084 ||||| || || || || ||||| ||||||| | Sbjct 98904 AGTTTGAGGCGCTGTACGA----AAAGTACGAGCAGGAGGGCCGCGG----TCGTGCCTC 98853 Query 262085 GCACGA----CAGA---TCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCC 262137 | | | |||| | |||| |||||| | | ||| || | |||||| |||| || Sbjct 98852 GATCAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACCGAGACTGGCAACCC 98793 Query 262138 CTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA- 262196 | |||| | ||||||||| | ||||| | ||||||||| ||||||||||||||| Sbjct 98792 GTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCAT 98733 Query 262197 CGACAGAGGCCAACCTGTGCACCGAGATCGTCCAGT 262232 | ||| ||||||||||||| ||||| || ||| Sbjct 98732 CCGCAG-CTCCAACCTGTGCACGGAGATTATCGAGT 98698 Score = 102 bits (112), Expect = 1e-15 Identities = 142/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 262870 AGCGGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA-CAGCATGGCCTGCGCAA 262928 |||| || ||||||||||| | || || | | | || | |||||||| ||||||| Sbjct 98272 AGCGACCTCTGGGACTGGGCATCGCTCAAGGAG-CAGATCAAGCAGCATGGTGTGCGCAA 98214 Query 262929 CTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGA 262988 |||| |||| | |||| ||||| ||||||| ||||||||||| |||||||||| ||| Sbjct 98213 CTCGCTGCTGCTTGCGCCGATGCCGACGGCCAGCACGTCGCAGATTCTGGGCAACAACGA 98154 Query 262989 GGCGTTCGAG--GTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 | |||||| || || || |||||| ||| |||||| ||||| | ||||| || Sbjct 98153 GTGCTTCGAGCCGT-AT-ACTTCCAACATTTACCAGCGCCGTGTGCTGGCTGGCGAGTTC 98096 Query 263047 ACCGTGGTCAACC 263059 || ||||||| Sbjct 98095 CAGGTTGTCAACC 98083 >seq7 Length=948245 Score = 118 bits (130), Expect = 2e-20 Identities = 179/250 (72%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACC- 332914 |||| || || ||| || | ||||| |||||||||||| ||| || | |||||| | | Sbjct 479203 CGTCGGTCAGACGCGCATACCGCAGAATGGCACAACGGGACTGGAGCGGCTCGATAATCT 479144 Query 332915 -ATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT 332973 |||| ||| |||||| || | ||| || ||||| || |||| | |||||||||| Sbjct 479143 TATTG--GACTGGTTGCACGCAAAGGCGAAGCGCGTGGTGTTGGAGTAGATTTCCATGGT 479086 Query 332974 CGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGAT 333033 || |||||||||||||| ||| || | ||||||| ||||||||||| |||| Sbjct 479085 GCGGCGCAGGGCCTGTTGGGCACCCGAGGTCATCGAGTCGGCTTCGTCGAGGATAATGAG 479026 Query 333034 CTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGT-TTGATGATCTTGC 333092 |||||||| || | || ||| || ||||| ||| ||| ||||| |||| Sbjct 479025 TTTGTGGCGGCCATTGGGAAGAGTGACTTTTTTCTGGGC-AAATGTCTTGATTCGGTTGC 478967 Query 333093 GCACGACGTC 333102 |||| ||||| Sbjct 478966 GCACAACGTC 478957 >seq60 Length=101284 Score = 96.9 bits (106), Expect = 5e-14 Identities = 154/217 (71%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 1600560 CCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCG 1600619 |||||||| || ||| |||| ||| || | |||||||||||||||| |||||| Sbjct 82496 CCTTGCCCGTCAGACACTCAATCAGCTTTCCGACCGTCATGCGCGACGGGAAACCGTGCG 82555 Query 1600620 GGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTC--GGT 1600677 |||| || | ||||||||| || | | ||| || | | |||| |||||| ||| Sbjct 82556 GGTTCATGATGATGTCGGGCAC--CAGCCCGGCGTCGCTAA-ACGGCAGGTCCTCCTGGT 82612 Query 1600678 GGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCAC 1600737 || | | | ||||| |||||||| |||||||||||||| | |||||| |||| Sbjct 82613 CGACA--ATGATTCCCACCACACCCTTTTGCCCGTGGCGCGACGAGAATTTGTCACCCAG 82670 Query 1600738 CTCGGGCTGGCGCATGGCCCGCGTGACGATCTTGACC 1600774 ||||||| | ||| | |||||| | ||||||| Sbjct 82671 CTCGGGCCGCCGCGTCTGCCGCGTCTGCACCTTGACC 82707 >seq2 Length=1560128 Score = 86.0 bits (94), Expect = 9e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 ||||| || || ||||||||||||||| ||| | ||||||||| ||||||| | ||| Sbjct 1029485 GGCGCTGTTGGCGCGCGCACCACCGAGTCGCAGCTACACCGCGAGCTGGCGTCTGGCCTG 1029544 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCA 165864 || | ||| | || ||||| ||| |||||||||||| Sbjct 1029545 TCGTTCCCCGTGGGGTTCAAGAACGGCACCGACGGCA 1029581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177803869660312