Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq5 116 3e-21
seq27 109 5e-19
seq15 109 5e-19
>seq5
Length=956377
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || ||||| || | || |||||| || |||||||| ||||
Sbjct 899405 CCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 899464
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || |||| |||||||||||||| ||||| |||| ||||||||||| | |||
Sbjct 899465 AGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGA 899524
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| | |||||||||| ||||| ||| | |||| | | || || ||| || ||
Sbjct 899525 ATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCAATGGTATCCGACGACTCAAC 899583
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| ||| || || || || |||| || || ||||| ||||||||
Sbjct 899584 CTCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| || | | || || |||| || |||||||| || || ||
Sbjct 899668 CTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAA 899727
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||||| ||| | | |||||||||| ||||| ||||| | |
Sbjct 899728 AATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTTCACATT 899787
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || |||||||||| || || || || || || | ||| || ||
Sbjct 899788 GTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTGAC 899847
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 899848 AAAGATCTGCAT 899859
Score = 104 bits (114), Expect = 2e-17
Identities = 127/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | || || || |||| || |||||||| || |||||
Sbjct 900181 CTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 900240
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| |||||||| |||| ||||| | |||||||||| ||||| ||| | ||
Sbjct 900241 GATCAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGAC-GT 900299
Query 35665 TGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714
|| | | |||||| ||||||||||| | ||||| || || |||||||
Sbjct 900300 TGTCGATAGTGTCGGAAGATTCCACCTCAAGGGTGATGGTCTTGCCCGTCA 900350
>seq27
Length=468876
Score = 109 bits (120), Expect = 5e-19
Identities = 135/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| ||||||||||| |||| || ||| || | || || |||||||| || || || |
Sbjct 115674 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 115733
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||| ||||||||||||| |||| || |||||||||| |||||| ||| | ||||
Sbjct 115734 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 115792
Query 35667 -CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | |||||| || || ||||||| || || || |||||||||| || || ||
Sbjct 115793 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 115852
Query 35726 AA 35727
||
Sbjct 115853 AA 115854
>seq15
Length=634592
Score = 109 bits (120), Expect = 5e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| || || || | || ||||||||||| || || || |
Sbjct 108844 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 108785
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||| |||||||| |||| |||| || |||||||||| |||||| ||| | | |
Sbjct 108784 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 108725
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||| || || ||||| | || ||||| |||||||||| || || || |
Sbjct 108724 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 108665
Query 35727 ATATCTGCAT 35736
| ||||||||
Sbjct 108664 AAATCTGCAT 108655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793171746080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |