Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq27 109 5e-19 seq15 109 5e-19 >seq5 Length=956377 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||| || |||||||| |||| Sbjct 899405 CCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 899464 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||||||||||||| ||||| |||| ||||||||||| | ||| Sbjct 899465 AGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGA 899524 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| ||||| ||| | |||| | | || || ||| || || Sbjct 899525 ATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCAATGGTATCCGACGACTCAAC 899583 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||| || || || || |||| || || ||||| |||||||| Sbjct 899584 CTCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | || || |||| || |||||||| || || || Sbjct 899668 CTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAA 899727 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| ||| | | |||||||||| ||||| ||||| | | Sbjct 899728 AATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTTCACATT 899787 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || |||||||||| || || || || || || | ||| || || Sbjct 899788 GTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTGAC 899847 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 899848 AAAGATCTGCAT 899859 Score = 104 bits (114), Expect = 2e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || || || |||| || |||||||| || ||||| Sbjct 900181 CTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 900240 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| |||| ||||| | |||||||||| ||||| ||| | || Sbjct 900241 GATCAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGAC-GT 900299 Query 35665 TGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 || | | |||||| ||||||||||| | ||||| || || ||||||| Sbjct 900300 TGTCGATAGTGTCGGAAGATTCCACCTCAAGGGTGATGGTCTTGCCCGTCA 900350 >seq27 Length=468876 Score = 109 bits (120), Expect = 5e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| ||||||||||| |||| || ||| || | || || |||||||| || || || | Sbjct 115674 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 115733 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||||| |||| || |||||||||| |||||| ||| | |||| Sbjct 115734 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 115792 Query 35667 -CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || ||||||| || || || |||||||||| || || || Sbjct 115793 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 115852 Query 35726 AA 35727 || Sbjct 115853 AA 115854 >seq15 Length=634592 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| || || || | || ||||||||||| || || || | Sbjct 108844 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 108785 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| |||||||| |||| |||| || |||||||||| |||||| ||| | | | Sbjct 108784 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 108725 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||| || || ||||| | || ||||| |||||||||| || || || | Sbjct 108724 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 108665 Query 35727 ATATCTGCAT 35736 | |||||||| Sbjct 108664 AAATCTGCAT 108655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793171746080