Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5 129 6e-25 seq15 102 8e-17 seq27 100 3e-16 seq53 98.7 1e-15 seq18 89.7 5e-13 >seq5 Length=956377 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| |||||||||||||| | ||| || ||| ||| Sbjct 899651 ACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTCG 899710 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || ||||| | ||||||||| || || || || || || || || ||| Sbjct 899711 AGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGA 899770 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | |||||||| || ||||| || ||||||||||| || Sbjct 899771 ATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTTG 899830 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | ||| || || || || ||||| Sbjct 899831 CCGGTAAGAGTCTTGACAAAGATCTGCAT 899859 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| |||||||| || ||||| ||||| || ||||||||||| | ||| | Sbjct 900155 AGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGG 900214 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| |||| |||||||||||| || || || || || Sbjct 900215 CCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGAATACCCTCC 900274 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | |||||||| |||||||| || || || Sbjct 900275 TTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGATTCCACCTCAAGGGTG 900334 Query 134676 ATGGTTTTACCGGT 134689 ||||| || || || Sbjct 900335 ATGGTCTTGCCCGT 900348 Score = 113 bits (124), Expect = 5e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 899861 CCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 899920 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| ||||| |||| ||||||||||| || || Sbjct 899921 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGA 899980 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | || || ||||| || || Sbjct 899981 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACT 900040 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 ||||| || ||||| || ||||| | || || |||| Sbjct 900041 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGA 900077 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || | ||| || || || ||||| || |||||||||||| | ||| || Sbjct 899414 AGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGA 899473 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || ||||| |||| ||||||||| || || || || || || Sbjct 899474 CCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCC 899533 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | || || ||||| || || || || ||| Sbjct 899534 TTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACCTCCAGCGTA 899593 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || || ||||| Sbjct 899594 ATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 >seq15 Length=634592 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | ||| | || || ||||| ||||| || || | Sbjct 108844 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 108785 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||||||||| || || ||||| || || || || || || ||||| || Sbjct 108784 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 108725 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || ||||| ||||| || ||||| || | || || |||| Sbjct 108724 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 108665 Query 134704 AAATTTGCATTTTG 134717 |||| ||||| ||| Sbjct 108664 AAATCTGCATCTTG 108651 >seq27 Length=468876 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| ||||||||||||||| | |||| | || |||||||| ||||| || || | Sbjct 115674 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 115733 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || || || ||||| || || || || || || ||||| || Sbjct 115734 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 115793 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || || || |||||||| ||||| || | || || |||| Sbjct 115794 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 115853 Query 134704 AAATTTGC 134711 || | ||| Sbjct 115854 AACTGTGC 115861 >seq53 Length=159929 Score = 98.7 bits (108), Expect = 1e-15 Identities = 358/557 (64%), Gaps = 5/557 (1%) Strand=Plus/Minus Query 7854 CACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCG 7913 ||||||||| | ||| ||| | |||||| |||| ||||| || ||| | | || Sbjct 99209 CACCAACGGTACCTCCAACGGCATCATTCCCATGCTGCGTGTGTTTAACAACACTGCCCG 99150 Query 7914 ACATGTAGACCAGGGGGGAAA---GCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTG 7970 | || |||||||| || || |||| || ||| |||||| || |||||||||| Sbjct 99149 CTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGTG 99090 Query 7971 GCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAA 8030 |||||| || | | | | || | ||||| ||| || ||||| Sbjct 99089 GCACGCCGATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAAGAGGTTCG 99030 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTT 8090 || || ||||| ||| | | ||||| | || || ||||| |||| ||| || | Sbjct 99029 CGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGACCTGTTCATGAAGCGTGTCGAGAA 98970 Query 8091 CGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGG 8150 |||| | ||| | || ||||||||| | |||||| | || ||||| Sbjct 98969 GAACGCTGACTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGG 98910 Query 8151 TTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGC-GCGTACGTGCGGCAAG 8209 | ||||| ||||| || | ||||| || || ||| ||| ||||| | | Sbjct 98909 CGAGGAGTTTGAGGCGCTGTACGAAAAGTACGAGCAGGAGGGCCGCGGTCGTGCCTCGA- 98851 Query 8210 TGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGT 8269 | || || | | ||| ||||||| | || || | ||| || || | |||| Sbjct 98850 TCAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACCGAGACTGGCAACCCGT 98791 Query 8270 ACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTT 8329 |||||||||||| ||| |||||| ||| ||||| || | ||| |||||||||| Sbjct 98790 TCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCC 98731 Query 8330 GTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTT 8389 | || ||| |||||| | || ||| | ||||| | ||||| || || || ||||| | Sbjct 98730 GCAGCTCCAACCTGTGCACGGAGATTATCGAGTACTGTGCGCCGGATGAGGTTGCCGTGT 98671 Query 8390 GCAATCTAGCGTCGGTG 8406 |||| || || ||| || Sbjct 98670 GCAACCTGGCTTCGCTG 98654 >seq18 Length=597235 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 21718 AGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTG 21777 || || ||||| | |||||||| ||||||||||||||||||| |||||| || || Sbjct 244360 AGGCAGGCAAAGTCGGTGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTGGAAAAGGTC 244419 Query 21778 AGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaa 21837 || |||||||| | ||| || || | | ||||| | |||||| ||||| || Sbjct 244420 AGGCCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCAAAGGCGCCGGAGAAG 244479 Query 21838 aaCACGCCCTCCACAATGGCGAACGCCACCATGCGCCGCGCCAA 21881 || | |||||| || ||| || ||||||| |||| | || || Sbjct 244480 AAGATGCCCTCGACGGCGGCAAAGGCCACCAGGCGCTGGGCAAA 244523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397919871520