Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq53 111 5e-19 >seq53 Length=159929 Score = 111 bits (122), Expect = 5e-19 Identities = 362/550 (66%), Gaps = 32/550 (6%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| || || ||| | |||||||| |||||| || ||||||||||| || || || Sbjct 99191 CGGCATCATTCCCATGCTGCGTGTGTTTAACAACACTGCCCGCTACGTCGACCAGGGTGG 99132 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGA 255087 | ||| ||||| || || || |||| ||||||||||||||||||||||| |||| Sbjct 99131 CAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCCGATGTGTTTGA 99072 Query 255088 ACGGTT--TTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATC 255145 ||| || || ||| | | || ||||| || ||| | |||||| || | Sbjct 99071 ---GTTCCTTGAC--CTGCGCAAGAACCACGGCAAGGAAGAGGTTCGCGCCCGTGATCTT 99017 Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA-----GA 255200 | | ||| | ||| | || ||||| || || ||||| ||||| || || Sbjct 99016 TTCCTGGCTCTGTGGATCCCTGACCTGTTCAT--GAAGCGTG--TCGAGAAGAACGCTGA 98961 Query 255201 CCTGGAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGT 255260 ||||| || ||||| |||||| | || || || | ||||| | || || |||| Sbjct 98960 -CTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGT 98902 Query 255261 TTGAAAAACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTAC----GCCAAGTGCC 255315 |||| ||||| ||||||||| | ||||| | |||| | |||| ||| Sbjct 98901 TTGAGGCGCTGTACGAAAAGTACGAGCAGGAGGGCCGCGGTCGTGCCTCGATCAAG-GCC 98843 Query 255316 CGCGAAGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCT 255375 | ||||| | ||| || | || || |||| || || || | |||||| | Sbjct 98842 C----AGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACCGAGACTGGCAACCCGTTCAT 98787 Query 255376 ATTGCACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCG 255434 || |||| |||||| || |||| | | ||||| ||| || || || ||| Sbjct 98786 GCTGTACAAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGCACCATCCGCA 98728 Query 255435 GCTCGAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCA 255494 |||| ||||||||||| ||||||| | || | || | ||||| ||||| |||| Sbjct 98727 GCTCCAACCTGTGCACGGAGATTATCGAGTACTGTGCGCCGGATGAGGTTGCCGTGTGCA 98668 Query 255495 ACTTGGCGTC 255504 || |||| || Sbjct 98667 ACCTGGCTTC 98658 Score = 93.3 bits (102), Expect = 1e-13 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 256124 CAGATCGAGGAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGC 256183 |||||| || |||| || |||||||||||| | | ||||| ||||| || |||||| Sbjct 98239 CAGATCAAGCAGCATGGTGTGCGCAACTCGCTGCTGCTTGCGCCGATGCCGACGGCCAGC 98180 Query 256184 ACCGCTCAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCG 256243 || | || || ||||| ||| || || |||| || ||| ||||| | | | | Sbjct 98179 ACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCGTATACTTCCAACATTTACCAG 98120 Query 256244 CGCCGCGTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTA 256303 ||||| || | | ||||||||| || || |||| || || || ||||||||| Sbjct 98119 CGCCGTGTGCTGGCTGGCGAGTTCCAGGTTGTCAACCCGTGGCTGCTGCGCGACTTGGTG 98060 Query 256304 CGACTCGGTCTGTGGAACGAGAAGATGCAACAACGCATAATTCGGGCCCGTGGGTCGGTG 256363 || ||||||||| || || ||| | | ||||| ||| || |||||| | Sbjct 98059 GACCTGGGTCTGTGGTCGGATAACATGAAGAACCGCATCATTGCGGAGAACGGGTCGATC 98000 Query 256364 CAGAACATT 256372 ||||||||| Sbjct 97999 CAGAACATT 97991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588334453357820