Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq53 111 5e-19
>seq53
Length=159929
Score = 111 bits (122), Expect = 5e-19
Identities = 362/550 (66%), Gaps = 32/550 (6%)
Strand=Plus/Minus
Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030
|||||| || || ||| | |||||||| |||||| || ||||||||||| || || ||
Sbjct 99191 CGGCATCATTCCCATGCTGCGTGTGTTTAACAACACTGCCCGCTACGTCGACCAGGGTGG 99132
Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGA 255087
| ||| ||||| || || || |||| ||||||||||||||||||||||| ||||
Sbjct 99131 CAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCCGATGTGTTTGA 99072
Query 255088 ACGGTT--TTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATC 255145
||| || || ||| | | || ||||| || ||| | |||||| || |
Sbjct 99071 ---GTTCCTTGAC--CTGCGCAAGAACCACGGCAAGGAAGAGGTTCGCGCCCGTGATCTT 99017
Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA-----GA 255200
| | ||| | ||| | || ||||| || || ||||| ||||| || ||
Sbjct 99016 TTCCTGGCTCTGTGGATCCCTGACCTGTTCAT--GAAGCGTG--TCGAGAAGAACGCTGA 98961
Query 255201 CCTGGAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGT 255260
||||| || ||||| |||||| | || || || | ||||| | || || ||||
Sbjct 98960 -CTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGT 98902
Query 255261 TTGAAAAACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTAC----GCCAAGTGCC 255315
|||| ||||| ||||||||| | ||||| | |||| | |||| |||
Sbjct 98901 TTGAGGCGCTGTACGAAAAGTACGAGCAGGAGGGCCGCGGTCGTGCCTCGATCAAG-GCC 98843
Query 255316 CGCGAAGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCT 255375
| ||||| | ||| || | || || |||| || || || | |||||| |
Sbjct 98842 C----AGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACCGAGACTGGCAACCCGTTCAT 98787
Query 255376 ATTGCACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCG 255434
|| |||| |||||| || |||| | | ||||| ||| || || || |||
Sbjct 98786 GCTGTACAAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGCACCATCCGCA 98728
Query 255435 GCTCGAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCA 255494
|||| ||||||||||| ||||||| | || | || | ||||| ||||| ||||
Sbjct 98727 GCTCCAACCTGTGCACGGAGATTATCGAGTACTGTGCGCCGGATGAGGTTGCCGTGTGCA 98668
Query 255495 ACTTGGCGTC 255504
|| |||| ||
Sbjct 98667 ACCTGGCTTC 98658
Score = 93.3 bits (102), Expect = 1e-13
Identities = 170/249 (68%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 256124 CAGATCGAGGAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGC 256183
|||||| || |||| || |||||||||||| | | ||||| ||||| || ||||||
Sbjct 98239 CAGATCAAGCAGCATGGTGTGCGCAACTCGCTGCTGCTTGCGCCGATGCCGACGGCCAGC 98180
Query 256184 ACCGCTCAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCG 256243
|| | || || ||||| ||| || || |||| || ||| ||||| | | | |
Sbjct 98179 ACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCGTATACTTCCAACATTTACCAG 98120
Query 256244 CGCCGCGTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTA 256303
||||| || | | ||||||||| || || |||| || || || |||||||||
Sbjct 98119 CGCCGTGTGCTGGCTGGCGAGTTCCAGGTTGTCAACCCGTGGCTGCTGCGCGACTTGGTG 98060
Query 256304 CGACTCGGTCTGTGGAACGAGAAGATGCAACAACGCATAATTCGGGCCCGTGGGTCGGTG 256363
|| ||||||||| || || ||| | | ||||| ||| || |||||| |
Sbjct 98059 GACCTGGGTCTGTGGTCGGATAACATGAAGAACCGCATCATTGCGGAGAACGGGTCGATC 98000
Query 256364 CAGAACATT 256372
|||||||||
Sbjct 97999 CAGAACATT 97991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588334453357820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |