Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq53 176 6e-39 seq7 91.5 2e-13 >seq53 Length=159929 Score = 176 bits (194), Expect = 6e-39 Identities = 894/1402 (64%), Gaps = 45/1402 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||| | || || || || ||||| || || || |||| || || | ||| Sbjct 98122 GGTAAATGTTGGAAGTATACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGC 98181 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || || | || || ||| || | ||| | || |||||| | | Sbjct 98182 TGGCCGTCGGCATCGGCGCAAGCAGCAGCGAGTTGCGCACACCATGCTGCTTGATCTGCT 98241 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 ||||||| ||||||| || | ||| || | || |||| ||||||||||||| Sbjct 98242 CCTTGAGCGATGCCCAGTCCCAGAGGTCGCTGGGCGTGACGTTCC-ACATGTCAAACTGC 98300 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC- 110943 || | || ||||| | || || ||||| | || || | || | || | || Sbjct 98301 AGAATGCCCTGGGAAACAGGCGAGCCCTCGTACGTAGAGTACGTTCCCTC--CTCCTGCG 98358 Query 110944 CAATTCACAGCT-CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 |||| || | |||| ||| | ||||| || ||||| |||||||| | | || | Sbjct 98359 CAATCTCCATCGACGCCGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATTTGCGTGTTGA 98418 Query 111003 TCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGC 111057 || || || | || ||||| |||| |||| || || ||||||| Sbjct 98419 GCTTGCGAGCCTCGGCCGACTCAAAAGGCATGCGAAGCGCCAAGAAGG-----CATCCGC 98473 Query 111058 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 111117 || || || ||||| | ||||||||| | ||| ||||| || || |||| ||| Sbjct 98474 CAGGCCCTGGACACCAACACCAATAGGGCGGTGGCGCATGTTGCTGTTCTGCGC---CTC 98530 Query 111118 A---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 ||||| || || |||||||| ||||| || || ||| | ||| || Sbjct 98531 GGGCACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTTGCGCACAACTACCTTGGT 98590 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 || || || || || | | || | | | | | | |||| || || || Sbjct 98591 GACCTCGTGCAGCTTCTGGAAGTCGTACTCGTTCTTGTTGTAGTCGACAAACGACGGCAG 98650 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || | || |||| ||||| || || ||||||| | |||||| | ||| || Sbjct 98651 AGCCAGCGAAGCCAGGTTGCACACGGCAACCTCATCCGGCGCACAGTACTCGATAATCTC 98710 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 || || | |||||| || || || |||| ||||| ||||| ||||| |||||| Sbjct 98711 CGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCA 98770 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 |||||||| |||||| | || | || ||||| ||||| | | ||||| || | Sbjct 98771 GTGGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCGGTCTGCGCCTCCAGAATGGCGTA 98830 Query 111415 CCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 111473 ||| | | || | | || | | | ||| | || |||||| |||||||||| || Sbjct 98831 CCACAGCTTCTGGGCCTTGATCGA-GGCACGACCGCGGCCCTCCTGCTCGTACTTTTCGT 98889 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 | || || ||||||||||| || ||||| || || || || || || || | Sbjct 98890 ACAGCGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACA 98949 Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 |||| ||| | | | | ||| || ||||||||||| ||||| || |||||||| | Sbjct 98950 TCAGAGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAACAGGTCAGGGATCCACAGAG 99009 Query 111594 --ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 | |||| ||||| | ||| ||||||| | || ||||| || | ||||| Sbjct 99010 CCAGGAAA--AGATCACGGGCGCGAACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAG 99067 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTC 111707 |||||| | | ||| |||||||| ||||| || || | || | | || | | Sbjct 99068 GAACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTT 99127 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | | ||| | || | || ||||| || ||| |||||| || || ||||| ||||| | Sbjct 99128 GTTG-CCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAACACACGCAGCATGGGAATGA 99186 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATG 111825 | || | || ||| || || || || |||||| |||| | | || Sbjct 99187 TGCCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAG--CCCGTGGCGCGGATGCGGTG 99244 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 || | | || ||||| || ||| ||| ||||| ||||| | | || || | Sbjct 99245 GACATTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATC 99304 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 || || || | || ||||||||||| || ||| ||||||||| |||| ||| || Sbjct 99305 GTAAATGCCCTCAATCGAGTCCTCCTTCATGTCGACCAGGAAGCAAGACGACAGCTG-GG 99363 Query 111946 TCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGA 112002 || || |||||||| ||||| || || || | || || ||| | | |||| || Sbjct 99364 CCTGGGGCGTACCAGCGTTGAACAGCGTGGGCGAGGCATGGGTGA--AGAACTTGCTCGA 99421 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT-TCCCCGTGGATGCCGATTGCGA 112061 ||| || ||| ||||| | ||| ||| | ||| || || |||||| | || | Sbjct 99422 CATGAGGTTGTACGTCTCAATGACGCGATCGA-CTCTGTCGCCCCAGATGCCAACAGCCA 99480 Query 112062 CCCGCATGAACATGTACTGTGG 112083 | ||||| | ||||| ||| || Sbjct 99481 CACGCATAATCATGTGCTGGGG 99502 >seq7 Length=948245 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||||||||| || || |||| || || || ||| | || || | |||| | | Sbjct 403863 GCATCAATCTCGTCGATAAAGATGATGCACGGCGCATTCTTACGTGCCGTGGCAAACAAA 403922 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGC 11747 ||||| || | | ||||||||| ||||||||||| ||||| | | | || || | Sbjct 403923 TCGCGCACACGCGACGGACCCACACCCACAAACATCTCGACAAACTCGGATCCGCTGA-C 403981 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 ||| | ||| || || || || || || |||| ||| || || ||||| |||| Sbjct 403982 GCTGAA-GAACGGCACGCCCGACTCGCCAGCCGTGGCCTTGGCCAGCAGCGTCTTGCCCG 404040 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 |||| ||| |||| || | ||||| || ||||||||||| || | || | | Sbjct 404041 TACCGGGCGGGCCCGACAGGATCGCGCCACGCGGGATCTTGGCGCCTAGCCGAACAAACT 404100 Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCC 11927 | ||||| | |||||| || | ||||| ||| || || | |||||| |||| || | Sbjct 404101 TTTCGGGCTTCTTGAGGAACTGCACAAACTCCATAATCTCGACCTTGGCCTCGTCCATGC 404160 Query 11928 C 11928 | Sbjct 404161 C 404161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031403369600