Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq53 185 1e-41 seq18 93.3 5e-14 seq7 84.2 3e-11 >seq53 Length=159929 Score = 185 bits (204), Expect = 1e-41 Identities = 893/1401 (64%), Gaps = 47/1401 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCT 104278 || ||| ||||| | ||||| ||||| | || || ||||| |||| | ||| Sbjct 99502 CCCCAGCACATGATTATGCGTGTGGCTGTTGGCATC--TGGGGC-GACAGAGTCGATCGC 99446 Query 104279 GTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCC 104336 ||| | ||||| ||| || ||||| |||| | | ||| || || | || || | Sbjct 99445 GTCATTGAGACGTACAACCTCATGTCGAGCAAGTTCT--TCACCCATGCCTCGCCCACGC 99388 Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGG 104396 | ||||| |||||||| || |||| |||| ||||||||| ||| || |||| Sbjct 99387 TGTTCAACGCTGGTACGCCCCAGGCCCAGCTGTCGTCTTGCTTCCTGGTCGACATGAAGG 99328 Query 104397 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGG 104456 ||||||| || | || || || | || || | | ||||| ||||| ||| || Sbjct 99327 AGGACTCGATTGAGGGCATTTACGATACCCTCAAGACCTGTGCTATGATCTCCAAGATGG 99268 Query 104457 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGG 104514 | || ||||| || | | |||| | | |||| |||||| || || Sbjct 99267 CGGGTGGTATCGGTCTCAATGTCCACCGCATCCGCGCCACGGG--CTCGTACATTGCCGG 99210 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || || ||| || | || || ||||| ||||| || || |||||| ||| || || Sbjct 99209 CACCAACGGTACCTCCAACGGCATCATTCCCATGCTGCGTGTGTTTAACAACACTGCCCG 99150 Query 104575 CTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCAT 104630 ||| || | || | ||| | | | | || | | || | || || ||||| | Sbjct 99149 CTACGTCGACCAGGGTGG-CAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGT 99091 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 ||||||| ||| | | ||||||||||| |||| ||||| || | || |||| | Sbjct 99090 GGCACGCCGATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAAGAGGTTC 99031 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | ||| ||||| ||| ||||| ||||| || || || ||||||||| | || ||| Sbjct 99030 GCGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGACCTGTTCATGAAGCGTGTCGAGA 98971 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| | | ||| |||| | || || || || ||||| || |||| | | Sbjct 98970 AGAACGCTGACTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACG 98911 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 | ||||||||||| || || ||| |||||||||| | || || || | ||| || Sbjct 98910 GCGAGGAGTTTGAGGCGCTGTACGAAAAGTACGAGCAGGAGGGCCGCGGTCGTGCCTCGA 98851 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | | || | || | ||||| | || ||||| || | || ||||||||||| | || Sbjct 98850 T-CAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACCGAGACTGGCAACCCG 98792 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||| ||||| ||| ||| |||| ||||| || || ||||| |||| ||| Sbjct 98791 TTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATC 98732 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || ||||| || || || || || | || | | |||||| || ||| Sbjct 98731 CGCAGCTCCAACCTGTGCACGGAGATTATCGAGTACTGTGCGCCGGATGAGGTTGCCGTG 98672 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGA 105108 || ||||| || || | ||||| || || ||| || | || | || || | || Sbjct 98671 TGCAACCTGGCTTCGCTGGCTCTGCCGTCGTTTGTCGACTACAACAAGAACGA-GTACGA 98613 Query 105109 TTATGAAAAACTCCACGAAGTTACGAA---AACTGTCACCAAAAACCTAAACAGAGTTAT 105165 | | || || ||||| || || || | ||| | ||||| ||| | | || Sbjct 98612 CTTCCAGAAGCTGCACGAGGTCACCAAGGTAGTTGTGCGC---AACCTGAACCGCATCAT 98556 Query 105166 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 ||| || |||||||| ||| || | || || ||| | ||||| || Sbjct 98555 TGACGTCAACCACTACCCCGTGCCCGAG---GCGCAGAACAGCAACATGCGCCACCGCCC 98499 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA----- 105277 |||||| | ||||| ||||| || ||||||| ||| ||| ||| |||| Sbjct 98498 TATTGGTGTTGGTGTCCAGGGCCTGGCGGATGCCTTC-----TTGGCGCTTCGCATGCCT 98444 Query 105278 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCC 105337 ||||| || | ||| || | |||| ||| || ||||||||||| || ||||| Sbjct 98443 TTTGAGTCGGCCGAGGCTCGCAAGCTCAACACGCAAATCTTTGAGACCATCTACCACGCT 98384 Query 105338 GCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 105397 ||||| |||| ||| | || ||| || || | || || | ||||| Sbjct 98383 GCTCTGACGGCGTCGATGGAGATTGCGCAGGAGGAGGGAACGTACTCTACGTACGAGGGC 98324 Query 105398 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCA 105456 || || | ||| || || | || || ||||| |||| |||| || | || ||| | Sbjct 98323 TCGCCTGTTTCCCAGGGCATTCTGCAGTTTGACATGT-GGAACGTCACGCCCAGCGACCT 98265 Query 105457 CTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 || ||||||| | | |||||||| | |||||| || | ||| | || ||| || || Sbjct 98264 CTGGGACTGGGCATCGCTCAAGGAGCAGATCAAGCAGCATGGTGTGCGCAACTCGCTGCT 98205 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 | || || ||||| || ||| ||| | || || |||| || || || ||||| || Sbjct 98204 GCTTGCGCCGATGCCGACGGCCAGCACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGA 98145 Query 105577 ACCCTACACGACGAACATCTA 105597 || || || | ||||| || Sbjct 98144 GCCGTATACTTCCAACATTTA 98124 >seq18 Length=597235 Score = 93.3 bits (102), Expect = 5e-14 Identities = 342/524 (65%), Gaps = 15/524 (3%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || || ||| | ||||| || |||||| | |||| ||||| | | | || Sbjct 244883 TGGACGGCCGAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACAACCGCATGAAC 244824 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 | | |||||| | ||||| || |||| || |||||||| | || ||||| ||| Sbjct 244823 AAGGACGAAAAGTACTTCATCTCGCACGTCCTCGCCTTCTTTGCCGCCTCAGATGGCATT 244764 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| | | | ||| | | ||||| || |||| |||| || | | Sbjct 244763 GTCAACGAGAACCTGGTTGAGCGCTTCTCAGGCGAGGTCCAGATCC-CTGAGGCCCGCTG 244705 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | || ||||| ||| |||| Sbjct 244704 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACGTACTCGCTGCTCA 244646 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAACA 94734 | |||| ||| || ||||| || || | ||| | || || | |||||| | || Sbjct 244645 TCGACACGTACATCAAGGAGCCCGCCCAGC-GCAGCTACCTGTTCAACGCCATCGACACC 244587 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCG 94791 |||| || || | || || || ||||| | |||||| ||| || | ||||| Sbjct 244586 ATTCCCTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAGTGGATTGCCGACCACGAGTCG 244527 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 ||||||| |||| || | || ||||| || ||||| ||||||||||| || Sbjct 244526 A---CCTTTGCCCAGCGCCTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 244470 Query 94852 TCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 |||| | | |||| ||||| ||||| ||||| ||||| || || ||| ||| Sbjct 244469 GCCTTTGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGCCTGACCTTTTCC 244410 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| || || || |||||||| || ||| || ||||| Sbjct 244409 AACGAGCTGATTTCGCGCGACGAGGGCCTGCACACCGACTTTGC 244366 >seq7 Length=948245 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||||||||| || || |||| |||||| || ||| | || || |||| | Sbjct 403862 GGCATCAATCTCGTCGATAAAGATGATGCACGGCGCATTCTTACGTGCCGTGGCAAACAA 403921 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 9820 ||| || |||||| | |||||||| ||||||||||| ||||| | | | || || Sbjct 403922 ATCGCGCACACGCGACGGACCCACACCCACAAACATCTCGACAAACTCGGATCCGCTGAC 403981 Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 | || ||| || || || || || || |||| ||| || || ||||| ||| Sbjct 403982 GCT--GAAGAACGGCACGCCCGACTCGCCAGCCGTGGCCTTGGCCAGCAGCGTCTTGCCC 404039 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||| ||| |||| |||| || || || || ||||||||||| Sbjct 404040 GTACCGGGCGGGCCCGACAGGATCGCGCCACGCGGGATCTTGGCGCC 404086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260245902240