Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq5 147 7e-30
seq36 109 2e-18
seq15 100 9e-16
>seq5
Length=956377
Score = 147 bits (162), Expect = 7e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| || |||||||||||||| || ||||| || || ||
Sbjct 899629 CATACCACCACGAAGACGGAGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTC 899688
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || || || || || || ||||| ||||| || ||
Sbjct 899689 CGAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGG 899748
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || |||||||| || | || ||||| ||||| | || |||| ||
Sbjct 899749 AGGGATACCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTC 899808
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || |||| ||||| ||||| || || || ||||| ||||||||
Sbjct 899809 CACCTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859
Score = 134 bits (148), Expect = 4e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| | | ||||| | || ||||| ||||| || || || || || || ||
Sbjct 899405 CCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 899464
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| || || || || || || || || ||||||||||| ||||| ||||| ||||| |||
Sbjct 899465 AGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGA 899524
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
|| || || || |||||||| || | || || || ||||| | ||| || | |||||
Sbjct 899525 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACC 899584
Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || |||| ||||| || || || || || ||||| ||||||||
Sbjct 899585 TCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631
Score = 123 bits (136), Expect = 8e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 900142 CATACCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 900201
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | || || || || ||||| || || ||||||||||| ||||| |||||||| ||
Sbjct 900202 AGACAGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGG 900261
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || |||||||| || | || || || || || | || || | |||
Sbjct 900262 AGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGATTC 900321
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719
|| ||||| || | ||||| || || | |||
Sbjct 900322 CACCTCAAGGGTGATGGTCTTGCCCGTCACTGT 900354
Score = 120 bits (132), Expect = 9e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 899857 CATACCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 899916
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | || || || || ||||| || || ||||||||||| || || |||||||| ||
Sbjct 899917 AGACAGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGG 899976
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || ||||| || || | || || || || || | ||| || | ||
Sbjct 899977 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTC 900036
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||||| || || | ||||| ||||| || || || ||
Sbjct 900037 GACTTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGAC 900075
>seq36
Length=308131
Score = 109 bits (120), Expect = 2e-18
Identities = 182/263 (69%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || ||||| || || ||| | |||||| || || || || || || |||
Sbjct 256897 ACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAGGCCACCAAGGACGCCGGTCTTATT 256956
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | || ||||| | || || || || ||||||||||| || ||||| || ||
Sbjct 256957 GCCGGTCTTAACGTTCTGCGTATCATCAACGAGCCCACTGCTGCTGCCATTGCCTACGGT 257016
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
||||| || | | || || || | || || || ||| | ||||||||||||
Sbjct 257017 CTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGATCTGGGTGGTGGTACT 257076
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || || || |||| || || || ||||| || || | || ||||||
Sbjct 257077 TTCGATGTCTCTCTGCTGACCATTGAGGATGGTATCTTTGAGGTCAAGTCCACCGCTGGT 257136
Query 349859 GATACACATCTTGGTGGAGAAGA 349881
|| || || || ||||| || ||
Sbjct 257137 GACACCCACCTGGGTGGTGAGGA 257159
>seq15
Length=634592
Score = 100 bits (110), Expect = 9e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || || || || || || | || || ||||| || || || || ||||| |||||
Sbjct 108842 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 108783
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| || |||||||| || ||||| || || || ||||| || || | || ||||| ||
Sbjct 108782 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 108723
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | || || | ||||| || || |||| ||||| || || || || || || |||
Sbjct 108722 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 108663
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 108662 ATCTGCAT 108655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515252924521028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |