Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5 147 7e-30 seq36 109 2e-18 seq15 100 9e-16 >seq5 Length=956377 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || |||||||||||||| || ||||| || || || Sbjct 899629 CATACCACCACGAAGACGGAGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTC 899688 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || || || ||||| ||||| || || Sbjct 899689 CGAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGG 899748 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || ||||| ||||| | || |||| || Sbjct 899749 AGGGATACCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTC 899808 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| ||||| ||||| || || || ||||| |||||||| Sbjct 899809 CACCTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859 Score = 134 bits (148), Expect = 4e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| | || ||||| ||||| || || || || || || || Sbjct 899405 CCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 899464 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || ||||||||||| ||||| ||||| ||||| ||| Sbjct 899465 AGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGA 899524 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || |||||||| || | || || || ||||| | ||| || | ||||| Sbjct 899525 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACC 899584 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || |||| ||||| || || || || || ||||| |||||||| Sbjct 899585 TCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 Score = 123 bits (136), Expect = 8e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 900142 CATACCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 900201 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || ||||| || || ||||||||||| ||||| |||||||| || Sbjct 900202 AGACAGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGG 900261 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || || || || || | || || | ||| Sbjct 900262 AGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGATTC 900321 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || ||||| || | ||||| || || | ||| Sbjct 900322 CACCTCAAGGGTGATGGTCTTGCCCGTCACTGT 900354 Score = 120 bits (132), Expect = 9e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 899857 CATACCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 899916 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || ||||| || || ||||||||||| || || |||||||| || Sbjct 899917 AGACAGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGG 899976 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || || || || || | ||| || | || Sbjct 899977 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTC 900036 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| || || | ||||| ||||| || || || || Sbjct 900037 GACTTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGAC 900075 >seq36 Length=308131 Score = 109 bits (120), Expect = 2e-18 Identities = 182/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || ||| | |||||| || || || || || || ||| Sbjct 256897 ACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAGGCCACCAAGGACGCCGGTCTTATT 256956 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || ||||| | || || || || ||||||||||| || ||||| || || Sbjct 256957 GCCGGTCTTAACGTTCTGCGTATCATCAACGAGCCCACTGCTGCTGCCATTGCCTACGGT 257016 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||| || | | || || || | || || || ||| | |||||||||||| Sbjct 257017 CTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGATCTGGGTGGTGGTACT 257076 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| || || || ||||| || || | || |||||| Sbjct 257077 TTCGATGTCTCTCTGCTGACCATTGAGGATGGTATCTTTGAGGTCAAGTCCACCGCTGGT 257136 Query 349859 GATACACATCTTGGTGGAGAAGA 349881 || || || || ||||| || || Sbjct 257137 GACACCCACCTGGGTGGTGAGGA 257159 >seq15 Length=634592 Score = 100 bits (110), Expect = 9e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| || || || || ||||| ||||| Sbjct 108842 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 108783 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || |||||||| || ||||| || || || ||||| || || | || ||||| || Sbjct 108782 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 108723 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||||| || || |||| ||||| || || || || || || ||| Sbjct 108722 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 108663 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 108662 ATCTGCAT 108655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252924521028