Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq53 304 1e-77 seq18 136 4e-27 seq41 122 1e-22 >seq53 Length=159929 Score = 304 bits (336), Expect = 1e-77 Identities = 508/725 (70%), Gaps = 16/725 (2%) Strand=Plus/Minus Query 53234 CGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCA 53290 || ||| |||||||||| || | ||| ||| |||| ||| || || ||| |||| Sbjct 99448 CGCGTCATTGAGACGTACAACCTCATGTCGAGC---AAGTTCTTCACCCATGCCTCGCCC 99392 Query 53291 ACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 || |||||||||||||||||| || | ||| ||||| ||||||||||| | ||| Sbjct 99391 ACGCTGTTCAACGCTGGTACGCCCCAGGCCCAGCTGTCGTCTTGCTTCCTGGTCGACATG 99332 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||| |||||||| || ||||| ||||| || |||||| ||||| ||||||||| Sbjct 99331 AAGGAGGACTCGATTGAGGGCATTTACGATACCCTCAAGACCTGTGCTATGATCTCCAAG 99272 Query 53411 TGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCA 53468 | |||||||||||||| || | || || | || |||| || | ||| | || Sbjct 99271 ATGGCGGGTGGTATCGGTCTCAA-TG-TCCACCGCATCCGCGCCACGGGCTCGTACATTG 99214 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || ||||| | || | || ||| | || ||||| || || || |||||||| | Sbjct 99213 CCGGCACCAACGGTACCTCCAACGGCATCATTCCCATGCTGCGTGTGTTTAACAACACTG 99154 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 |||| |||||| |||||||||| |||||| || | || ||||| ||||| |||| Sbjct 99153 CCCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGC 99094 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648 ||||||||||||| | | ||||| || || ||||| ||| || || | |||||| Sbjct 99093 CGTGGCACGCCGATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAAGAGG 99034 Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708 | ||| |||||| || || ||||||||||| || ||||| |||||| | || | Sbjct 99033 TTCGCGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGACCTGTTCATGAAGCGTGTCG 98974 Query 53709 AGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTC 53767 ||||| ||| || ||| ||||||||||| ||||||||||| ||||| | | || | Sbjct 98973 AGAAGAACGCTGACTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTG-C 98915 Query 53768 TACGGTGAGGAGTTTAACGAGATGTATCGGACGTAC--GCAGTTCAGGGCCGCTACAAGA 53825 ||||| ||||||||| | | | |||| | |||| |||| |||||||| Sbjct 98914 TACGGCGAGGAGTTTGAGGCGCTGTACGAAAAGTACGAGCAG--GAGGGCCGCGGTCGTG 98857 Query 53826 AGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAA 53885 | ||||||| | || | ||| | || || || || ||| ||||| || | Sbjct 98856 CCTCGATCAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACCGAGACTGGCA 98797 Query 53886 CGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCG 53945 |||| |||| |||||||| |||| |||||||||||||||||| | ||| Sbjct 98796 ACCCGTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCA 98737 Query 53946 TCATC 53950 |||| Sbjct 98736 CCATC 98732 Score = 114 bits (126), Expect = 1e-20 Identities = 296/446 (66%), Gaps = 9/446 (2%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| | ||||| ||||| || || ||| | ||||| |||||||| Sbjct 98218 CGCAACTCGCTGCTGCTTGCGCCGATGCCGACGGCCAGCACGTCGCAGATTCTGGGCAAC 98159 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| ||||||||||| || ||||||| |||| |||||| || || || ||| Sbjct 98158 AACGAGTGCTTCGAGCCGTATACTTCCAACATTTACCAGCGCCGTGTGCTGGCTGGCGAG 98099 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| | || | ||| || | | | |||| Sbjct 98098 TTCCAGGTTGTCAACCCGTGGCTGCTGCGCGACTTGGTGGACCTGGGTCTGTGGTCGGAT 98039 Query 55664 CAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG--AGATTC 55718 | || |||| || || |||| | ||||||| || ||||||| | || || Sbjct 98038 AACATGAAGAACCGCATCATTGCGGAGAACGGG---TCGATCCAGAACATTCCCAGCATC 97982 Query 55719 CTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777 | | | | ||||| | | ||| |||||||||||||||| | ||| | | | Sbjct 97981 CCCGATGACATCAAGATGCTGTACAAGACGGTGTGGGAGATTTCGCAGCGCACGGTTGTG 97922 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG 55837 | ||| ||| || || || |||| ||| |||||||| ||||| || |||||| |||| Sbjct 97921 CAGATGGCTGCCGACCGCGGAGCGTTCATTGACCAGTCGCAGTCGCTCAACATCCACATG 97862 Query 55838 GAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTC 55897 || | ||| | ||| |||| | | | ||||||||| || |||||| ||| ||| Sbjct 97861 AAGGACCCTACCATGGGCAAGATTACCAGCATGCACTTTGCGGGCTGGAAGCTGGGTCTC 97802 Query 55898 AAGACGGGTATGTACTATCTGCGGAC 55923 |||||||| |||||||| ||||| || Sbjct 97801 AAGACGGGCATGTACTACCTGCGTAC 97776 >seq18 Length=597235 Score = 136 bits (150), Expect = 4e-27 Identities = 550/846 (65%), Gaps = 34/846 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||| ||||| ||||||||||| || | | ||||||||||||||| Sbjct 244078 TAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGCGAGATGTTCTCCATA 244137 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGG 74579 |||| || |||||| | | | ||| | ||| || || | ||| || Sbjct 244138 AAGTCAAAGGGGTTCGTGGAGCGGTAGAC---CTTTTCGTTGCCGAGGGCCACCAGCAGA 244194 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || ||||| | |||||||||| |||| | || | |||||||| || | Sbjct 244195 CGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCG 244254 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAATCTT 74698 || ||||| ||||| || | ||||| |||| | || || || || | || | Sbjct 244255 CAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACGACGGCATCAGTG-ATGATTTC 244313 Query 74699 GTGAATGT-CTT--TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754 | |||| ||| || |||| || | ||||||| ||| | ||| | || ||||| Sbjct 244314 CTCAATGAGCTTCTTGCTGGGGCGGTTGT---TCAGGTGCGAGAAGAGCAGGCA-GGCAA 244369 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| ||| || || | |||| || || ||||| | ||||| |||| Sbjct 244370 AGTCGGTGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTGGAAAAGGTCAGGCCGGGCA 244429 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || |||||||| || ||| || |||| |||| || |||||||||||| | Sbjct 244430 TCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCAAAGGCGCCGGAGAAGAAGATGCCCT 244489 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATC--GGAAGTC-ATCCAAG 74931 |||| |||||||| || ||||| || || || | | || || | | ||||| Sbjct 244490 CGACGGCGGCAAAGGCCACCAGGCGCTGGGCAAAGGTCGACTCGTGGTCGGCAATCCACT 244549 Query 74932 TCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGG 74990 | | ||||| || || || || || |||||| | || ||||| || | ||| ||| Sbjct 244550 TGAGGGCCCAGTCGGCCTTGCGGCGGA-TGCAGGGAATGGTGTCGATGGCGTTGAACAGG 244608 Query 74991 CTTGCCTTCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCG 75048 | || | || |||| ||||||| | | |||| || | || ||||||||||| | Sbjct 244609 --TAGCTGCGCTGGGCGGGCTCCTTGATGTACGTGTCGATGAGCAGCGAGTACGTCTCGG 244666 Query 75049 AATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTA 75108 | || || ||| | | |||| | ||||||| | || ||||| | ||||| | Sbjct 244667 AGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGGGATCTGGA 244726 Query 75109 CATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAA 75168 | || ||| || | | | ||||| |||| ||||| || |||||||| || | Sbjct 244727 CCTCGCCTGAGAAGCGCTCAACCAGGTTCTCGTTGACAATGCCATCTGAGGCGGCAAAGA 244786 Query 75169 AAGCCAGTACCATTTTGATAAAGTGGCGCTCATC---GTCAGTGAGTTTGTCCCAATCCT 75225 | || || || ||| |||| || || || || | |||| ||| || | Sbjct 244787 AGGCGAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGTCGT 244846 Query 75226 TCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATC-GCCTTTT 75282 || ||| | || ||||||||||||| |||||||||| || || || ||||| | Sbjct 244847 GGAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAGGACGCC---TCGGCCTTCT 244903 Query 75283 TGTACA 75288 |||||| Sbjct 244904 TGTACA 244909 >seq41 Length=234129 Score = 122 bits (134), Expect = 1e-22 Identities = 193/275 (70%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 ||||| ||| ||| ||||||| ||||||||| |||||||| ||||| | || Sbjct 152777 AGGCGTGTGTGAATATAACGAGCCGAGGCAGCATCCGAACCACCAGCCAGACGAGATCCA 152718 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | ||||| ||||||| | ||| | |||||||| ||| |||||||| || |||| Sbjct 152717 AAGTTACCACTGGGCTCCAGGCAGTTGACGTTGTTGGAGCCTACAAAGTTCTGCGCCAGA 152658 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | || || || || ||||||||| || || || ||||| | | | ||| Sbjct 152657 CCAATGATGGTCTGCTGCAGCGACGCCTCACCGTGCTGGTAGGCCGTGCGACCGGACACA 152598 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || || |||| | |||||||||| || |||| | || || ||| |||||| | Sbjct 152597 TAACCAGCAAGCTCAACCACCTTCATATCCTTGACAATA--TTGCTCATGAAGCAGGCGT 152540 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | || ||||||||||||| ||||| | ||| ||| Sbjct 152539 AGATAACCTTGCGCTGACCGGGCTTGAAACCGTCC 152505 Score = 105 bits (116), Expect = 7e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108 ||| |||||| ||||| ||||| || | |||||| | ||| |||||| ||| ||| Sbjct 152751 GGCAGCATCCGAACCACCAGCCAGACGAGATCCAAAGTTACCACTGGGCTCCAGGCAGTT 152692 Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168 || |||||||| ||| || || ||||| |||| | | || || |||||| ||| Sbjct 152691 GACGTTGTTGGAGCCTACAAAGTTCTGCGCCAGACCAATGATGGTCTGCTGCAGCGACGC 152632 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228 |||||||| || || ||||| | | | | || || || | || |||||||||| Sbjct 152631 CTCACCGTGCTGGTAGGCCGTGCGACCGGACACATAACCAGCAAGCTCAACCACCTTCAT 152572 Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288 ||| | | || || ||| |||||||| || ||||||||||| || || || Sbjct 152571 ATCCTTGACAATATTGCTCATGAAGCAGGCGTAGATAACCTTGCGCTGACCGGGCTTGAA 152512 Query 152289 ACCGTCCA 152296 |||||||| Sbjct 152511 ACCGTCCA 152504 Score = 93.3 bits (102), Expect = 5e-14 Identities = 254/379 (67%), Gaps = 10/379 (3%) Strand=Plus/Minus Query 152736 CTCGATCAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGA 152795 || || |||| ||| | | ||| || || | ||||| | | ||||||||||| || Sbjct 152058 CTTGAGCAGCGACGGAAACTGCACCTGCAAGAAGTTGATCAAAAGACCCTTGATGTGAGA 151999 Query 152796 TCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAGGTCACGTAGTGA 152855 || ||| ||||| || | ||| ||||| ||| |||||||||| | | | | | ||| Sbjct 151998 ACCATCATGATCCTGATCAGCCATAATCATTAGATGACCGTAGCGGA-GACTCTTGGTGT 151940 Query 152856 CC-CGTAGAC--CTTTCCATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTC 152912 || |||||| | || || | || || || | || |||| || || |||| Sbjct 151939 CCGTGTAGACGGCCTT--GTGCTTGAGACCCAGAAACTGCTTGATATTTTGAATCTCCTG 151882 Query 152913 ATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGG 152972 || | ||| | ||| | | || ||||| || || ||| || ||| || || || || Sbjct 151881 GTTCTTGGTGATCTGATCAAGCGACGCATCACGCACGTTGAGCATCTTACCACGCAGGGG 151822 Query 152973 AAACACGCCGAACGCGTTGC-GGCCTACAA-CGCTCAGACCGGCAATAGCAAGGGCTTTC 153030 |||||| || || ||| | | || | | || || | ||||||| | ||| | || Sbjct 151821 AAACACTCC-AATGCGGTCCGGGTCAAGAATAGCAC-GACCGGCCACAGCCAAACTCTTG 151764 Query 153031 GCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAG 153090 || ||||||||||| || | ||| ||||| || ||||| | | ||||| ||| || Sbjct 151763 GCTGAGTCACCCTCCGTCAGAATTAGCGTGCACTCGTGGCCGTGGCGCGTACCAGCCAAG 151704 Query 153091 TTGGCGTCGTCAAGCTTGG 153109 ||||| ||| | ||||||| Sbjct 151703 TTGGCATCGACCAGCTTGG 151685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215480144800