Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 >seq3 Length=1108403 Score = 98.7 bits (108), Expect = 8e-16 Identities = 199/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 30061 CACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 |||||||||||| | |||| ||| ||||| || || ||||| || |||| Sbjct 700366 CACGTAAAACTGCGCAAACAT---GTGACACGGCGGCAGCGCCATCTTCTTCAGGTCTGC 700310 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177 |||||||| |||| || ||||||||| | ||| | || ||||| | | || ||| Sbjct 700309 CGGGTTCCACGCGCTCATGATGATGCGTCGGTCGTACGGCGTGTTCTTCAGCTTGTGCAC 700250 Query 30178 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30237 ||| |||||| || || ||| || | |||||| | | | || ||||| Sbjct 700249 CACGTCCGCCAGCTGGTCGACGCCCTGGCCTGTGTAGTCGGTCTGCGCATCGACATACTC 700190 Query 30238 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30297 || |||||||| | ||||||||| |||||||| || |||||||| ||||| | | ||| Sbjct 700189 GGCGCCGAAATGGCGCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCGGCGCGGTG 700130 Query 30298 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30351 | | ||| |||| | | | | || |||||| ||||||||||||| Sbjct 700129 GCCCAGGCCGACGCTGTCGAGGTACGCGCGCGACCCGTTGCCGTCCCAGATCTT 700076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310023654992