Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq5 93.3 3e-14
>seq5
Length=956377
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | |||| || ||||| |||||| |||||||| || || ||
Sbjct 899633 CCACCACGAAGACGGAGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAG 899692
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || || || || ||||| || || | |||||| |||||||| ||
Sbjct 899693 AGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGG 899752
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||||||||||| ||| || | || || | ||| ||||| ||||||
Sbjct 899753 ATACCCTCCTTGTC-CTGAATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCAC 899811
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || ||||| | || || ||||| ||||||||
Sbjct 899812 CTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859
Score = 91.5 bits (100), Expect = 9e-14
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || ||||| |||||| || ||||| || || || || || ||
Sbjct 899414 AGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGA 899473
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || ||||| ||||| || | |||||| ||||| || || | ||||||
Sbjct 899474 CCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCC 899533
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || ||| | ||| || || ||| || |||| ||
Sbjct 899534 TTGTC-CTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACCTCCAGCGT 899592
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | ||| || ||||| ||||||||
Sbjct 899593 AATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| ||||| ||| |||||| || ||||| || || || || || ||
Sbjct 899870 AGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGG 899929
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || || || ||||| || | ||||| || ||||| || | ||||||
Sbjct 899930 CCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCC 899989
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 899990 TTGTCCTGGATCTT 900003
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| || | ||||| ||| |||||| || ||||| || || || || || ||
Sbjct 900155 AGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGG 900214
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || || || ||||| || | |||||| || ||||| || | ||||||
Sbjct 900215 CCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGAATACCCTCC 900274
Query 34609 TTGTC 34613
|||||
Sbjct 900275 TTGTC 900279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729308481708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |