Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5 136 3e-27 >seq5 Length=956377 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||||||| | |||||||| || ||||| | ||| Sbjct 899859 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATTACTCTGGAGGTGGAGTCATCC 899800 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||| ||||| || || || || || || || Sbjct 899799 GACACCATTGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 899740 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | || ||| || || | || || |||||| Sbjct 899739 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCGGACTACAAC 899680 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || ||||| | ||| | || ||||| || Sbjct 899679 ATTCAGAAGGAGTCTACTCTTCACCTGGTTCTCCGTCTTCGTGGTGGTAT 899630 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | ||||| || || || || |||| Sbjct 899631 ATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATTACGCTGGAGGTTGAGTCGTCG 899572 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || ||||| ||||| || || || || || || || Sbjct 899571 GATACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGACCAG 899512 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| ||| || || | ||||| |||||| Sbjct 899511 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTCTCCGACTACAAC 899452 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||||||||| | || |||||| ||||| |||| |||||| Sbjct 899451 ATCCAGAAGGAGTCGACTCTGCACTTGGTTCTGCGTCTGCGTGGTGGC 899404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || |||||||||||| | || || || ||||| || |||| || | || || Sbjct 900075 GTCAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCGTCGGATACCATCGAC 900016 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || || ||||| || ||||| || || ||||| ||||| | || Sbjct 900015 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATC 899956 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | || ||||| || | || ||| | || | || || |||||||| || |||||| Sbjct 899955 TTTGCTGGCAAGCAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAGGAG 899896 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||| | || |||| | ||| | || ||||| || Sbjct 899895 TCCACCCTCCACCTGGTGCTTCGTCTCCGTGGTGGTAT 899858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917986827520