Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3 105 6e-18 >seq3 Length=1108403 Score = 105 bits (116), Expect = 6e-18 Identities = 259/381 (68%), Gaps = 10/381 (3%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||||||||||||||| || |||| | | || ||| | | ||||||||||||||| Sbjct 699971 CCGCTGCTGACGACGAAGCGCGTGTTCACGCGGGCGGTGATTGCCGAGCTGCTGTGGTTC 700030 Query 34283 GT-GAGGGGGGCCACGAACACCAAGGAGCTCT-CGTCCCGGGGGGTGAAGATCTGGGACG 34340 | ||||| || ||| | | |||| || | || | ||||||||||||| Sbjct 700031 ATTGAGGGCAGC-ACGTCGTCGCTGCCGCTCAGCGAGGCCGGCA-TCAAGATCTGGGACG 700088 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCCCATCTCGGGAGGAGGGCGA 34398 ||||||| || | | || |||| ||| || | | | || | |||||||| Sbjct 700089 GCAACGGGTCGCGCGCGTACCTCGACA-GCGTCGGCCTGGGCCAC-CGCGCCGAGGGCGA 700146 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGA 34458 | ||||||| || ||||| ||||||||| | || || || || |||||| | | ||| Sbjct 700147 CCTGGGCCCCGTGTACGGCTTCCAGTGGCGCCATTTCGGCGCCGAGTAT-GTCGATGCGC 700205 Query 34459 AG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517 || | ||||| | || ||||| | ||||||||| | ||||| | ||| ||||| Sbjct 700206 AGACCGACTACACAGGCCAGGGCGTCGACCAGCTGGCGGACGTGGTGCACAAGCTGAAGA 700265 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577 | || | ||| || | ||| | ||| |||||||||||||| || || || Sbjct 700266 ACACGCCGTACGACCGACGCATCATCATGAGCGCGTGGAACCCGGCAGACCTGAAGAAGA 700325 Query 34578 TGGCGCTCCCCCCGTGCCACA 34598 ||||||| || ||||| |||| Sbjct 700326 TGGCGCTGCCGCCGTGTCACA 700346 Score = 105 bits (116), Expect = 6e-18 Identities = 259/381 (68%), Gaps = 10/381 (3%) Strand=Plus/Minus Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 |||| ||||| || ||||||||| || || |||||||||||||| ||| | || Sbjct 700346 TGTGACACGGCGGCAGCGCCATCTTCTTCAGGTCTGCCGGGTTCCACGCGCTCATGATGA 700287 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866 | | || ||| | || | ||||| ||| | ||||| | ||||||||| | | Sbjct 700286 TGCGTCGGTCGTACGGCGTGTTCTTCAGCTTGTGCACCACGTCCGCCAGCTGGTCGACGC 700227 Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 |||| || | ||||| | || ||| | | |||||| || || || || | ||||||| Sbjct 700226 CCTGGCCTGTGTAGTCGGTCTGCGCATCGAC-ATACTCGGCGCCGAAATGGCGCCACTGG 700168 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA--CCCCCGCTTGTCCA 6983 || ||||| || ||||||| ||||||||| | || | | | || ||| |||| | Sbjct 700167 AAGCCGTACACGGGGCCCAGGTCGCCCTCGGCGCG-GTGGCCCAGGCCGACGC-TGTCGA 700110 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACG-AGAGCTCCTTG 7042 | | | || ||||||| ||||||||||||| | || | || |||| | Sbjct 700109 GGTACGCGCGCGACCCGTTGCCGTCCCAGATCTTGA-TGCCGGCCTCGCTGAGCGGCAGC 700051 Query 7043 GTGTTCGTGGCCCCCCTC-ACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACAC 7101 | ||| || ||||| | ||||||||||||||| | | ||| || | | |||| Sbjct 700050 GACGACGT-GCTGCCCTCAATGAACCACAGCAGCTCGGCAATCACCGCCCGCGTGAACAC 699992 Query 7102 ACGTTTCGTCGTCAGCAGCGG 7122 || ||||||||||||||||| Sbjct 699991 GCGCTTCGTCGTCAGCAGCGG 699971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261974150720