Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 158 3e-33 seq15 156 1e-32 seq27 134 3e-26 >seq5 Length=956377 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||||||||| ||||| || || ||||| || |||| || || Sbjct 899638 ACGAAGACGGAGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGT 899697 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| ||||| || || || || ||||| ||||| | || Sbjct 899698 GCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACC 899757 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| ||||| || || |||||||| || || ||||| || Sbjct 899758 CTCCTTGTCCTGAATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAG 899817 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || || |||||||| ||||| | |||||| Sbjct 899818 AGTAATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || |||||||| || || | || || | || || Sbjct 899420 AGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCC 899479 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || || || |||||||| |||| || ||||||||| Sbjct 899480 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCC 899539 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || ||||| || || |||||||| || || || ||| Sbjct 899540 TGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACCTCCAGCGTAATGGTC 899599 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 899600 TTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | || || | || || Sbjct 899876 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCC 899935 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || || || ||||||| || ||||||||| Sbjct 899936 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCC 899995 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || || || || ||||| ||||| ||| Sbjct 899996 TGGATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGGGTGATGGTC 900055 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || || || ||||| || Sbjct 900056 TTGCCGGTCAGGGTCTTGAC 900075 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | || || | || || Sbjct 900161 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCC 900220 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || || || ||||||| || ||||||||| Sbjct 900221 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCC 900280 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| ||||| || ||| ||||| || ||||| ||| Sbjct 900281 TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGATTCCACCTCAAGGGTGATGGTC 900340 Query 211083 TTTCCCGT 211090 || ||||| Sbjct 900341 TTGCCCGT 900348 >seq15 Length=634592 Score = 156 bits (172), Expect = 1e-32 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | || || | ||||| |||||||||||||| |||||||| Sbjct 108842 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 108783 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || || || || |||| || ||||||||||||||||| || || || ||| Sbjct 108782 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 108723 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 |||||||| ||| ||||||||||| || |||||||| ||||| || ||||| || || Sbjct 108722 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 108663 Query 211107 ACCTGCATTTT 211117 | |||||| || Sbjct 108662 ATCTGCATCTT 108652 >seq27 Length=468876 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 115676 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 115735 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || |||| || ||||||||||||||||| || ||||| ||| Sbjct 115736 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 115795 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || || || ||||| ||||| || ||||| || || Sbjct 115796 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 115854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150871275740