Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5 140 8e-28 seq15 129 1e-24 seq27 109 1e-18 >seq5 Length=956377 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| ||||| || || |||| ||||| || | || ||| Sbjct 900151 ACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGT 900210 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| ||||| || || || || || || |||||||| Sbjct 900211 GCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGAATACC 900270 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || ||||| ||||| || | |||||| || | Sbjct 900271 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGATTCCACCTCAAG 900330 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| ||||||||||||| Sbjct 900331 GGTGATGGTCTTGCCCGTCA 900350 >seq15 Length=634592 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| || ||| | ||||| || |||||||| ||||||||||| Sbjct 108842 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 108783 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 108782 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 108723 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 |||||||| |||| || || || | || |||||||| ||||||| || || | ||| Sbjct 108722 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 108663 Query 225706 ACTTGCATTTT 225716 | ||||| || Sbjct 108662 ATCTGCATCTT 108652 >seq27 Length=468876 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| |||| || || | ||||| || |||||||| ||||||||||| || || || Sbjct 115685 TTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGC 115744 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || ||||| || |||||||| |||||||| ||| || ||||| ||||| Sbjct 115745 TGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCC 115804 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||| || || || | || || ||||| ||||||| || || | ||| Sbjct 115805 GAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 115854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530038772744