Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq3 84.2 2e-11
>seq3
Length=1108403
Score = 84.2 bits (92), Expect = 2e-11
Identities = 195/293 (67%), Gaps = 6/293 (2%)
Strand=Plus/Minus
Query 27328 ACGTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 27384
||||||||||| | | || ||| ||||| || || ||||| || ||||
Sbjct 700365 ACGTAAAACTGCGCAAACAT---GTGACACGGCGGCAGCGCCATCTTCTTCAGGTCTGCC 700309
Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444
|||||||| |||| || ||||||||| | ||| | || ||||| | | || |||
Sbjct 700308 GGGTTCCACGCGCTCATGATGATGCGTCGGTCGTACGGCGTGTTCTTCAGCTTGTGCACC 700249
Query 27445 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCT 27504
||| |||||| || || ||| || | |||||| | | || |||||
Sbjct 700248 ACGTCCGCCAGCTGGTCGACGCCCTGGCCTGTGTAGTCGGTCTGCGCATCGACATACTCG 700189
Query 27505 GCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 27564
|| |||||||| | ||| ||||| |||||||| || |||||||| ||||| | | |||
Sbjct 700188 GCGCCGAAATGGCGCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCGGCGCGGTGG 700129
Query 27565 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617
| | ||| |||| | | | | || |||||| |||||||||||||
Sbjct 700128 CCCAGGCCGACGCTGTCGAGGTACGCGCGCGACCCGTTGCCGTCCCAGATCTT 700076
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165
||||||| | ||||| | || | ||| || ||||| || ||||| || |||
Sbjct 700683 GGAAAGGCGCGCGGCTCGCGCTGCACCTGCACCTGCAGCGCGTCGACGTGGTCGGCGTAC 700624
Query 27166 ACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224
||||| ||||| |||| | ||| | || || || || | || ||| || | ||
Sbjct 700623 ACGTGCGCGTCGCCCATGACGTGCGTCAGGCTG-CCGGGCACGAGGTCGGCCGCGCGCGC 700565
Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284
| ||||| |||||| || ||||| || ||||| ||||| || ||||| ||||||||
Sbjct 700564 GAGCATGTGCGTGAGCAGCGAGTACGACGCAATGTTGAAGGGCACGCCGAGGCCCATGTC 700505
Query 27285 CCCCGACCTCTGGTAGAGCTGACA 27308
| ||| | |||||||||||| ||
Sbjct 700504 GCACGAGCGCTGGTAGAGCTGGCA 700481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369506857743956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |