Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 2e-11 >seq3 Length=1108403 Score = 84.2 bits (92), Expect = 2e-11 Identities = 195/293 (67%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 27328 ACGTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 27384 ||||||||||| | | || ||| ||||| || || ||||| || |||| Sbjct 700365 ACGTAAAACTGCGCAAACAT---GTGACACGGCGGCAGCGCCATCTTCTTCAGGTCTGCC 700309 Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444 |||||||| |||| || ||||||||| | ||| | || ||||| | | || ||| Sbjct 700308 GGGTTCCACGCGCTCATGATGATGCGTCGGTCGTACGGCGTGTTCTTCAGCTTGTGCACC 700249 Query 27445 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCT 27504 ||| |||||| || || ||| || | |||||| | | || ||||| Sbjct 700248 ACGTCCGCCAGCTGGTCGACGCCCTGGCCTGTGTAGTCGGTCTGCGCATCGACATACTCG 700189 Query 27505 GCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 27564 || |||||||| | ||| ||||| |||||||| || |||||||| ||||| | | ||| Sbjct 700188 GCGCCGAAATGGCGCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCGGCGCGGTGG 700129 Query 27565 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 | | ||| |||| | | | | || |||||| ||||||||||||| Sbjct 700128 CCCAGGCCGACGCTGTCGAGGTACGCGCGCGACCCGTTGCCGTCCCAGATCTT 700076 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 ||||||| | ||||| | || | ||| || ||||| || ||||| || ||| Sbjct 700683 GGAAAGGCGCGCGGCTCGCGCTGCACCTGCACCTGCAGCGCGTCGACGTGGTCGGCGTAC 700624 Query 27166 ACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 ||||| ||||| |||| | ||| | || || || || | || ||| || | || Sbjct 700623 ACGTGCGCGTCGCCCATGACGTGCGTCAGGCTG-CCGGGCACGAGGTCGGCCGCGCGCGC 700565 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 | ||||| |||||| || ||||| || ||||| ||||| || ||||| |||||||| Sbjct 700564 GAGCATGTGCGTGAGCAGCGAGTACGACGCAATGTTGAAGGGCACGCCGAGGCCCATGTC 700505 Query 27285 CCCCGACCTCTGGTAGAGCTGACA 27308 | ||| | |||||||||||| || Sbjct 700504 GCACGAGCGCTGGTAGAGCTGGCA 700481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506857743956