Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5 143 2e-29 seq15 134 1e-26 >seq5 Length=956377 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || |||||| || |||||||| || | ||| ||| |||| || Sbjct 899651 ACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCCTCG 899710 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || || | ||||||||| || | ||| | ||| ||||| ||| Sbjct 899711 AGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGA 899770 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | |||||||||| || |||||||||| ||||| ||||| Sbjct 899771 ATCTTCGACTTCACATTGTCAATGGTGTCGGATGACTCCACCTCCAGAGTAATGGTCTTG 899830 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| || ||||| ||||| Sbjct 899831 CCGGTAAGAGTCTTGACAAAGATCTGCAT 899859 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||| ||| || || |||||| ||||||||||| |||| | Sbjct 899405 CCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 899464 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| || |||||||||| ||||||||| || | || Sbjct 899465 AGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGGA 899524 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||| ||||| ||| ||||| ||| | | | ||||| || | || || ||| Sbjct 899525 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAACC 899584 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| |||||| ||||| || || || ||||| || ||||| ||||| Sbjct 899585 TCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 Score = 122 bits (134), Expect = 6e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || || ||||| || ||| |||||| ||||||||||| || Sbjct 900142 CATACCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 900201 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| || |||||||||| |||||||||||| | Sbjct 900202 AGACAGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGG 900261 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||| ||||| ||| ||||| ||| | | | || ||||||| ||||| Sbjct 900262 AGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGATTC 900321 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGT 44313 |||||| | || || ||||| ||||| Sbjct 900322 CACCTCAAGGGTGATGGTCTTGCCCGT 900348 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || ||| |||||| ||||||||||| || | || ||| |||| || Sbjct 899878 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCCTC 899937 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||||| ||||||||||| | ||| | || ||||| ||| Sbjct 899938 AAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTG 899997 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | ||||| || | || || || || | || || ||||| Sbjct 899998 GATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGGGTGATGGTCTT 900057 Query 44308 TCCCGTGAGGGTCTTCACGA 44327 || || |||||||| |||| Sbjct 900058 GCCGGTCAGGGTCTTGACGA 900077 >seq15 Length=634592 Score = 134 bits (148), Expect = 1e-26 Identities = 157/209 (75%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 44131 CAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAG 44190 || ||||||| |||| |||| ||||||||||| |||| || ||| | || ||||| Sbjct 108860 CATGTGAAGC-TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAG 108802 Query 44191 CTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTAT 44250 |||||| || || ||||||| ||||||||||| | || | || ||||| ||| || Sbjct 108801 CTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGAT 108742 Query 44251 CTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||| ||| || ||| | |||||||| | ||| || ||||| | ||||||||||| Sbjct 108741 CTTGGACTTGACATTGT--CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTA 108684 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| |||||||| ||||| || ||||| Sbjct 108683 CCCGTCAGGGTCTTGACGAAAATCTGCAT 108655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990066558892