Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq15 136 1e-26 seq27 123 6e-23 seq5 122 2e-22 >seq15 Length=634592 Score = 136 bits (150), Expect = 1e-26 Identities = 150/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | |||||||| || || || || || || ||||| |||||||||| Sbjct 108647 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGG 108703 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || ||| ||||||||||| || ||||| ||||| |||||||| || || || | Sbjct 108704 TTGAGTCCTCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTC 108763 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 | ||||| ||||| || || |||||||| || || ||||| || ||||| | ||||| Sbjct 108764 CCCCGGATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGT 108823 Query 178090 CCGATTATAACGTCCAAAA 178108 |||| || ||| |||| || Sbjct 108824 CCGACTACAACATCCAGAA 108842 >seq27 Length=468876 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 || ||| || | |||||| || || || || || || || || ||||| ||||| || Sbjct 115868 AACTGCCGCACAGTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGT 115809 Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035 ||| ||||| ||||| |||||||| ||||| |||||||| || || || || |||| Sbjct 115808 CCTCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGG 115749 Query 178036 ACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATT 178095 ||||||| || || |||||||| || || |||||||| ||||| | || || |||| | Sbjct 115748 ACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACT 115689 Query 178096 ATAACGTCCAAAA 178108 | ||| | || || Sbjct 115688 ACAACATTCAGAA 115676 >seq5 Length=956377 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || || || || || |||||||| || ||| Sbjct 899856 CAGATCTTTGTCAAGACTCTTACCGGCAAGACCATTACTCTGGAGGTGGAGTCATCCGAC 899797 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||||||||||||| || || ||||||||||||||||| Sbjct 899796 ACCATTGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAGCAG 899737 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || |||||||| || || | || || | || || ||| | Sbjct 899736 CGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCGGACTACAACATT 899677 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 899676 CAGAAGGAGTCTACTCTTCACCTGGTT 899650 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| ||||||||| || ||||| ||||| |||||||| Sbjct 900348 ACGGGCAAGACCATCACCCTTGAGGTGGAATCTTCCGACACTATCGACAACGTCAAGTCC 900289 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || || |||||||| ||||| || || ||||| || || || Sbjct 900288 AAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAGCGTCTGATCTTTGCTGGCAAG 900229 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | ||||| | || || ||| |||| || || || || || || Sbjct 900228 CAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTCCAC 900169 Query 178125 CTTGT 178129 || || Sbjct 900168 CTCGT 900164 Score = 116 bits (128), Expect = 9e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || || ||||||||||| || || || || ||||||| Sbjct 900077 TCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCGTCGGATACCATCG 900018 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| ||||| |||||||| || || || |||||||| ||||| || || | Sbjct 900017 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGA 899958 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || ||||| || || || | ||||| | || || ||| |||| || | Sbjct 899957 TCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACTCTGTCTGACTACAACATCCAGAAGG 899898 Query 178111 AATCAACACTGCATCTTGT 178129 | || || || || || || Sbjct 899897 AGTCCACCCTCCACCTGGT 899879 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || || || || ||||| || || || Sbjct 899628 CAGATCTTTGTCAAGACGCTGACTGGCAAGACCATTACGCTGGAGGTTGAGTCGTCGGAT 899569 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| || || || || || |||||||| Sbjct 899568 ACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGACCAGCAG 899509 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || || |||| || ||| || Sbjct 899508 CGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTCTCCGACTACAACATC 899449 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || ||||| |||| || Sbjct 899448 CAGAAGGAGTCGACTCTGCA-CTTGGTT 899422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730027866744