Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq27 154 1e-32
seq15 150 2e-31
seq5 147 2e-30
>seq27
Length=468876
Score = 154 bits (170), Expect = 1e-32
Identities = 149/189 (79%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||||||||| |||||||| |||||||| | || |||||||||||||| ||||| |
Sbjct 115674 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 115733
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
|||||||||| ||||||| ||||| || |||||||||| ||| || ||| ||| |
Sbjct 115734 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTG 115792
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | ||||| ||||| ||||||| || || || ||||||||||| ||||| |||
Sbjct 115793 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 115852
Query 41852 AAAATCTGC 41860
||| | |||
Sbjct 115853 AAACTGTGC 115861
>seq15
Length=634592
Score = 150 bits (166), Expect = 2e-31
Identities = 155/201 (77%), Gaps = 4/201 (2%)
Strand=Plus/Minus
Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726
|||| ||||||| ||||| |||||||| || ||||| | || || ||||||||||| |
Sbjct 108850 TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAG 108791
Query 41727 CGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT-- 41784
|||| ||||||||||| || |||| ||||| || |||||||||| ||| || |||
Sbjct 108790 CGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 108731
Query 41785 CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844
|| | || | ||||| ||||| ||||| | || ||||| ||||||||||| ||
Sbjct 108730 CATTGTCG--ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGT 108673
Query 41845 CTTTACGAAAATCTGCATGTT 41865
||| |||||||||||||| ||
Sbjct 108672 CTTGACGAAAATCTGCATCTT 108652
>seq5
Length=956377
Score = 147 bits (162), Expect = 2e-30
Identities = 173/229 (76%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || || ||||||||||||||| ||||| |||
Sbjct 899633 CCACCACGAAGACGGAGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAG 899692
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||||||||| || || ||||| ||||||| ||
Sbjct 899693 AGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGG 899752
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| | || | |||| || | | | |||||| |||||||
Sbjct 899753 ATACCCTCCTTGTCC-TGAATCTTCGACTTC-ACATTGTCAATGGTGTCGGATGACTCCA 899810
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || || || || || || ||||| || || ||||||||
Sbjct 899811 CCTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859
Score = 145 bits (160), Expect = 7e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||| ||||| || ||||||||| ||||| ||||||||
Sbjct 899404 GCCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 899463
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| |||| || |||||||| || || || ||||| ||||| ||||| | |||
Sbjct 899464 GAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 899523
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| | |||||||||| ||| | || | | ||| | | | || || |||||| |
Sbjct 899524 AATACCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAA 899582
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| ||| || || || || ||||||||||| || || ||||||||
Sbjct 899583 CCTCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631
Score = 125 bits (138), Expect = 7e-24
Identities = 160/218 (73%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||||| || || ||| ||||||||| ||||| ||||| ||
Sbjct 899861 CCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 899920
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || ||||||||||| || || ||||||||||| || |||| |||
Sbjct 899921 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGA 899980
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| ||| | | | || || |||||| ||
Sbjct 899981 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTATCCGACGACTCGAC 900039
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
|| | || || || || || ||||| ||||| ||||
Sbjct 900040 TTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGA 900077
Score = 113 bits (124), Expect = 4e-20
Identities = 150/206 (73%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || ||| ||||||||| ||||| ||||| ||
Sbjct 900146 CCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 900205
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || ||||||||||| || || ||||| ||||| || |||| |||
Sbjct 900206 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGA 900265
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| | || | | ||| | | | ||||||| || |||||
Sbjct 900266 ATACCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGATTCCAC 900324
Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840
||| | || || || || |||||||
Sbjct 900325 CTCAAGGGTGATGGTCTTGCCCGTCA 900350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303560811200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |