Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq27 154 1e-32 seq15 150 2e-31 seq5 147 2e-30 >seq27 Length=468876 Score = 154 bits (170), Expect = 1e-32 Identities = 149/189 (79%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| |||||||| |||||||| | || |||||||||||||| ||||| | Sbjct 115674 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 115733 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||||| ||||| || |||||||||| ||| || ||| ||| | Sbjct 115734 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTG 115792 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||| ||||||| || || || ||||||||||| ||||| ||| Sbjct 115793 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 115852 Query 41852 AAAATCTGC 41860 ||| | ||| Sbjct 115853 AAACTGTGC 115861 >seq15 Length=634592 Score = 150 bits (166), Expect = 2e-31 Identities = 155/201 (77%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726 |||| ||||||| ||||| |||||||| || ||||| | || || ||||||||||| | Sbjct 108850 TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAG 108791 Query 41727 CGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT-- 41784 |||| ||||||||||| || |||| ||||| || |||||||||| ||| || ||| Sbjct 108790 CGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 108731 Query 41785 CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844 || | || | ||||| ||||| ||||| | || ||||| ||||||||||| || Sbjct 108730 CATTGTCG--ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGT 108673 Query 41845 CTTTACGAAAATCTGCATGTT 41865 ||| |||||||||||||| || Sbjct 108672 CTTGACGAAAATCTGCATCTT 108652 >seq5 Length=956377 Score = 147 bits (162), Expect = 2e-30 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||||||||| ||||| ||| Sbjct 899633 CCACCACGAAGACGGAGAACCAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAG 899692 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||||||||| || || ||||| ||||||| || Sbjct 899693 AGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGG 899752 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || | |||| || | | | |||||| ||||||| Sbjct 899753 ATACCCTCCTTGTCC-TGAATCTTCGACTTC-ACATTGTCAATGGTGTCGGATGACTCCA 899810 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || ||||| || || |||||||| Sbjct 899811 CCTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 899859 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| ||||| || ||||||||| ||||| |||||||| Sbjct 899404 GCCACCACGCAGACGCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 899463 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| |||| || |||||||| || || || ||||| ||||| ||||| | ||| Sbjct 899464 GAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 899523 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| | || | | ||| | | | || || |||||| | Sbjct 899524 AATACCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCAA 899582 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||| || || || || ||||||||||| || || |||||||| Sbjct 899583 CCTCCAGCGTAATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 899631 Score = 125 bits (138), Expect = 7e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| || || ||| ||||||||| ||||| ||||| || Sbjct 899861 CCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 899920 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| || || ||||||||||| || |||| ||| Sbjct 899921 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGA 899980 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | || || |||||| || Sbjct 899981 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTATCCGACGACTCGAC 900039 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 || | || || || || || ||||| ||||| |||| Sbjct 900040 TTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGA 900077 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| ||||| || Sbjct 900146 CCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 900205 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| || || ||||| ||||| || |||| ||| Sbjct 900206 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGAGGA 900265 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | | ||| | | | ||||||| || ||||| Sbjct 900266 ATACCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGATTCCAC 900324 Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840 ||| | || || || || ||||||| Sbjct 900325 CTCAAGGGTGATGGTCTTGCCCGTCA 900350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303560811200