Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq18 159 7e-34 seq26 93.3 9e-14 seq5 86.0 1e-11 >seq18 Length=564976 Score = 159 bits (176), Expect = 7e-34 Identities = 319/469 (68%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 |||||| ||||||| || |||| | || || ||||| | || || || |||| Sbjct 230204 TTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCGCTTTC 230263 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 | |||| || |||||||| || ||| ||||||| || || | || |||||| Sbjct 230264 GCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAG 230323 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351 | || || ||||||||||| || || | | || | | || | | || || Sbjct 230324 CTGATTTCGCGTGACGAGGGTCTGCA-CACCGACTTTGCCTGCCTGCTCTTCTC---GCA 230379 Query 230352 CCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 || ||||| | || | ||| | || | | ||||| || || || |||| | Sbjct 230380 CCTGAACACCCGCCCTAGCAAGAAGCTTGTTGAGGAGATCATCACCGATGCCGTTGTCAT 230439 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 || ||||||||| | || ||| | || || ||| ||||||||||||| || || Sbjct 230440 TGAGAAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCCCTGCTTGGCATGAACGCCGACCT 230499 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| |||||||| || || || |||||||| | | ||||| ||||| ||||||| Sbjct 230500 CATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCCCTTGGCAACGAGAA 230559 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 || ||| ||| | ||||||||||| || |||||| ||| ||||| || ||||| Sbjct 230560 GGTCTACCGCTCCACGAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGTAAGAC 230619 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||| |||||||| ||||||| |||| | | |||||| || Sbjct 230620 CAACTTCTTCGAGAAGCGTGTTGGTGACTACCAGAAGGCGGGTGTGCTG 230668 >seq26 Length=133288 Score = 93.3 bits (102), Expect = 9e-14 Identities = 206/300 (69%), Gaps = 22/300 (7%) Strand=Plus/Plus Query 319313 TGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGG 319372 ||| |||||| ||||| || ||||||||||| | || | ||| || | || Sbjct 87363 TGACACCCTCAAGGAAACCAGGCTCGGGGAAGGTGAACTCGATCTCCGAGGCACCCAGCT 87422 Query 319373 CGTAGTA--ACTCG-CTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGT 319429 ||||||| ||| | | || ||| | |||||| |||||||| | ||| || || || Sbjct 87423 CGTAGTACGACTTGGCCGA---GGGGCACTTCTTGACGAACTCAGCCAGGTTACCACGGT 87479 Query 319430 ACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGG 319488 | ||| ||||| | | | ||||| |||||||| | | || || || ||||||| Sbjct 87480 AGCGCTTAAGCTTGAAGC---GCTCGTAGTGGATAAT-GTGCTGGCAGACGTTGTCGAGG 87535 Query 319489 AACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG----TTGATCAGGTA 319544 || || |||||||| || ||||| | |||| || | |||| ||| |||||| Sbjct 87536 AAACCAGAGTCGTGAGAGACAATGAT---CGAA--GTGC--AAGGAGAGTTGCACAGGTA 87588 Query 319545 TTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAG 319604 || || |||| | ||||| |||| ||||||||||| |||||||| |||||||| Sbjct 87589 GTCCTCCAGCCACTTAACGTTCTTCACATCCAGATGGTTGGTGGGCTCGTCCAGAAGCAG 87648 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || |||| ||| |||| || || |||||||| || || ||||||| || Sbjct 87901 GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATCAGAGTCGACTTACCCGAACC 87960 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || || |||||||||||||| | || || |||||| | | || | ||| || Sbjct 87961 GTTGGGACCGCACAGACCGTAGCGCTGGCCACGCTTCAGGCGCAGGTGGGTCTGGTTAAG 88020 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 ||||| || |||| || || || || || || | |||||||||||||| Sbjct 88021 CAGAATCTTGGCACCGTAGGCAAGGGAGAAAGTGCAGTTGCACAGATCCTCACC 88074 >seq5 Length=2148850 Score = 86.0 bits (94), Expect = 1e-11 Identities = 199/291 (68%), Gaps = 12/291 (4%) Strand=Plus/Minus Query 282393 ACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAATTTCTAGGAG--ACTGGGAAAAC 282450 |||| || ||||| |||| ||| ||||| | ||||||| || || || || | | Sbjct 1177968 ACGACCGGAGTGATAAACTCCTTGAAGAACTCGGGAATTTTGAGCAGCGACGGGAACTGC 1177909 Query 282451 AGCTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 282510 | || | |||||||| || | |||||| ||||||| || || |||| || | Sbjct 1177908 ACCTGT--AAAAAGTTGATCAAAAGACCTTTGATGTGAGAACCATCGTGATCCTGATCAG 1177851 Query 282511 TCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCG-GTT 282569 ||| ||||||| || || || | |||| ||||| |||| || | | ||| Sbjct 1177850 CCATAATCATCAAGTGGCCATAACGCAGACTCTTGGTGTCCGTGTAGACAGTCTTGTGTT 1177791 Query 282570 TGAAGGCCCAAAATTTGTTTGAGCGCGGTGATT-TCTTCGTTCTTTGTGATACTTG--CC 282626 ||| | ||||||| || |||| | ||| | || | |||||| ||||| ||| || Sbjct 1177790 TGA-GACCCAAAAACTGCTTGAT-GTTTTGAATCTCCTGGTTCTTGGTGAT--TTGGTCC 1177735 Query 282627 ACAGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCA 282677 | || |||||||||||||| |||| ||||| || | |||||| |||||| Sbjct 1177734 AGCGACGCATCGCGAACGTTGAGCATTTTACCACGCAAAGGAAACACACCA 1177684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823593398900