Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq18 159 7e-34
seq26 93.3 9e-14
seq5 86.0 1e-11
>seq18
Length=564976
Score = 159 bits (176), Expect = 7e-34
Identities = 319/469 (68%), Gaps = 8/469 (2%)
Strand=Plus/Plus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
|||||| ||||||| || |||| | || || ||||| | || || || ||||
Sbjct 230204 TTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCGCTTTC 230263
Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292
| |||| || |||||||| || ||| ||||||| || || | || ||||||
Sbjct 230264 GCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAG 230323
Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351
| || || ||||||||||| || || | | || | | || | | || ||
Sbjct 230324 CTGATTTCGCGTGACGAGGGTCTGCA-CACCGACTTTGCCTGCCTGCTCTTCTC---GCA 230379
Query 230352 CCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408
|| ||||| | || | ||| | || | | ||||| || || || |||| |
Sbjct 230380 CCTGAACACCCGCCCTAGCAAGAAGCTTGTTGAGGAGATCATCACCGATGCCGTTGTCAT 230439
Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468
|| ||||||||| | || ||| | || || ||| ||||||||||||| || ||
Sbjct 230440 TGAGAAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCCCTGCTTGGCATGAACGCCGACCT 230499
Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528
||| |||||||| || || || |||||||| | | ||||| ||||| |||||||
Sbjct 230500 CATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCCCTTGGCAACGAGAA 230559
Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588
|| ||| ||| | ||||||||||| || |||||| ||| ||||| || |||||
Sbjct 230560 GGTCTACCGCTCCACGAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGTAAGAC 230619
Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
|||||||||||| |||||||| ||||||| |||| | | |||||| ||
Sbjct 230620 CAACTTCTTCGAGAAGCGTGTTGGTGACTACCAGAAGGCGGGTGTGCTG 230668
>seq26
Length=133288
Score = 93.3 bits (102), Expect = 9e-14
Identities = 206/300 (69%), Gaps = 22/300 (7%)
Strand=Plus/Plus
Query 319313 TGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGG 319372
||| |||||| ||||| || ||||||||||| | || | ||| || | ||
Sbjct 87363 TGACACCCTCAAGGAAACCAGGCTCGGGGAAGGTGAACTCGATCTCCGAGGCACCCAGCT 87422
Query 319373 CGTAGTA--ACTCG-CTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGT 319429
||||||| ||| | | || ||| | |||||| |||||||| | ||| || || ||
Sbjct 87423 CGTAGTACGACTTGGCCGA---GGGGCACTTCTTGACGAACTCAGCCAGGTTACCACGGT 87479
Query 319430 ACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGG 319488
| ||| ||||| | | | ||||| |||||||| | | || || || |||||||
Sbjct 87480 AGCGCTTAAGCTTGAAGC---GCTCGTAGTGGATAAT-GTGCTGGCAGACGTTGTCGAGG 87535
Query 319489 AACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG----TTGATCAGGTA 319544
|| || |||||||| || ||||| | |||| || | |||| ||| ||||||
Sbjct 87536 AAACCAGAGTCGTGAGAGACAATGAT---CGAA--GTGC--AAGGAGAGTTGCACAGGTA 87588
Query 319545 TTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAG 319604
|| || |||| | ||||| |||| ||||||||||| |||||||| ||||||||
Sbjct 87589 GTCCTCCAGCCACTTAACGTTCTTCACATCCAGATGGTTGGTGGGCTCGTCCAGAAGCAG 87648
Score = 89.7 bits (98), Expect = 1e-12
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916
|||||| || |||| ||| |||| || || |||||||| || || ||||||| ||
Sbjct 87901 GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATCAGAGTCGACTTACCCGAACC 87960
Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976
||| || || |||||||||||||| | || || |||||| | | || | ||| ||
Sbjct 87961 GTTGGGACCGCACAGACCGTAGCGCTGGCCACGCTTCAGGCGCAGGTGGGTCTGGTTAAG 88020
Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030
||||| || |||| || || || || || || | ||||||||||||||
Sbjct 88021 CAGAATCTTGGCACCGTAGGCAAGGGAGAAAGTGCAGTTGCACAGATCCTCACC 88074
>seq5
Length=2148850
Score = 86.0 bits (94), Expect = 1e-11
Identities = 199/291 (68%), Gaps = 12/291 (4%)
Strand=Plus/Minus
Query 282393 ACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAATTTCTAGGAG--ACTGGGAAAAC 282450
|||| || ||||| |||| ||| ||||| | ||||||| || || || || | |
Sbjct 1177968 ACGACCGGAGTGATAAACTCCTTGAAGAACTCGGGAATTTTGAGCAGCGACGGGAACTGC 1177909
Query 282451 AGCTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 282510
| || | |||||||| || | |||||| ||||||| || || |||| || |
Sbjct 1177908 ACCTGT--AAAAAGTTGATCAAAAGACCTTTGATGTGAGAACCATCGTGATCCTGATCAG 1177851
Query 282511 TCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCG-GTT 282569
||| ||||||| || || || | |||| ||||| |||| || | | |||
Sbjct 1177850 CCATAATCATCAAGTGGCCATAACGCAGACTCTTGGTGTCCGTGTAGACAGTCTTGTGTT 1177791
Query 282570 TGAAGGCCCAAAATTTGTTTGAGCGCGGTGATT-TCTTCGTTCTTTGTGATACTTG--CC 282626
||| | ||||||| || |||| | ||| | || | |||||| ||||| ||| ||
Sbjct 1177790 TGA-GACCCAAAAACTGCTTGAT-GTTTTGAATCTCCTGGTTCTTGGTGAT--TTGGTCC 1177735
Query 282627 ACAGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCA 282677
| || |||||||||||||| |||| ||||| || | |||||| ||||||
Sbjct 1177734 AGCGACGCATCGCGAACGTTGAGCATTTTACCACGCAAAGGAAACACACCA 1177684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823593398900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |