Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq18 129 6e-25
>seq18
Length=564976
Score = 129 bits (142), Expect = 6e-25
Identities = 555/861 (64%), Gaps = 35/861 (4%)
Strand=Plus/Minus
Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735
||||| || | ||| || || ||||| ||||| || || || | || || || ||||||
Sbjct 230652 TGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTCC 230593
Query 16736 ATGAAATCAAAAGGATTAGT--AGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793
||||| ||||| || || || ||| | | | || | | | || || | | | |
Sbjct 230592 ATGAAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTCTCG--TTGCCAAGGGCAACCAGCA 230535
Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA- 16852
| || || ||||| || || || || ||| | ||| |||||| || | ||
Sbjct 230534 GACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGCAGGG 230475
Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911
|| | || ||||| || |||| || || || ||| || ||||| || || | || ||
Sbjct 230474 CGCAA-GGCAGAGCCTCGGTCAGGAACTCCTT-CTCAATGACAACGGCATCGGTGATGAT 230417
Query 16912 A--CT-AGCAA-CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATG 16967
|| | ||| || || || || ||| |||| | | || || | ||| || |
Sbjct 230416 CTCCTCAACAAGCTTCTTGCTAGGGCGGG---TGTTCAGG-TGCGAGAAGAGCAGGCAGG 230361
Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027
| || ||| || | |||||||| | || || ||||| ||||| |||| ||||
Sbjct 230360 CAAAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGG 230301
Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087
||||| || || || | ||| || || | |||||| | || || ||||| ||||
Sbjct 230300 GCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATAC 230241
Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147
||||||||| ||||| || | | || | ||| | |||| || || |||||
Sbjct 230240 CCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAAATCC 230181
Query 17148 ATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA-- 17205
| || | |||| ||||| || | |||||| || || || ||||| || ||
Sbjct 230180 ACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGAACA 230121
Query 17206 --TAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262
|| | | || | ||| || | || || || |||||||| || |||| |
Sbjct 230120 GGTAGCTGCGCTGG-----GCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGT 230066
Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322
|| ||||| ||||||||||| ||||| || ||||| ||||| ||||| || | ||
Sbjct 230065 CTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGAT 230006
Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382
|| || || | |||| || || | | || ||||| || |||||||| || ||
Sbjct 230005 CTGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGC 229946
Query 17383 GAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG------ 17436
||| || |||| | ||| ||||| || ||||||||| ||| | |||
Sbjct 229945 GAAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCC-TTGT--TCATGCGGTTGTT 229889
Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496
|||||| | | ||| ||||| | ||| | || |||| ||||| ||| ||| | ||
Sbjct 229888 CCAGTCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGC 229829
Query 17497 CTTTTTATACATATTCCAAAT 17517
||| || ||||| | ||| ||
Sbjct 229828 CTTCTTGTACATCTGCCAGAT 229808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545405920400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |