Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq18 129 6e-25 >seq18 Length=564976 Score = 129 bits (142), Expect = 6e-25 Identities = 555/861 (64%), Gaps = 35/861 (4%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| || | ||| || || ||||| ||||| || || || | || || || |||||| Sbjct 230652 TGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTCC 230593 Query 16736 ATGAAATCAAAAGGATTAGT--AGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 ||||| ||||| || || || ||| | | | || | | | || || | | | | Sbjct 230592 ATGAAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTCTCG--TTGCCAAGGGCAACCAGCA 230535 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA- 16852 | || || ||||| || || || || ||| | ||| |||||| || | || Sbjct 230534 GACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGCAGGG 230475 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 || | || ||||| || |||| || || || ||| || ||||| || || | || || Sbjct 230474 CGCAA-GGCAGAGCCTCGGTCAGGAACTCCTT-CTCAATGACAACGGCATCGGTGATGAT 230417 Query 16912 A--CT-AGCAA-CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATG 16967 || | ||| || || || || ||| |||| | | || || | ||| || | Sbjct 230416 CTCCTCAACAAGCTTCTTGCTAGGGCGGG---TGTTCAGG-TGCGAGAAGAGCAGGCAGG 230361 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 | || ||| || | |||||||| | || || ||||| ||||| |||| |||| Sbjct 230360 CAAAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGG 230301 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 ||||| || || || | ||| || || | |||||| | || || ||||| |||| Sbjct 230300 GCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATAC 230241 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 ||||||||| ||||| || | | || | ||| | |||| || || ||||| Sbjct 230240 CCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAAATCC 230181 Query 17148 ATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA-- 17205 | || | |||| ||||| || | |||||| || || || ||||| || || Sbjct 230180 ACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGAACA 230121 Query 17206 --TAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 || | | || | ||| || | || || || |||||||| || |||| | Sbjct 230120 GGTAGCTGCGCTGG-----GCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGT 230066 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322 || ||||| ||||||||||| ||||| || ||||| ||||| ||||| || | || Sbjct 230065 CTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGAT 230006 Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 || || || | |||| || || | | || ||||| || |||||||| || || Sbjct 230005 CTGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGC 229946 Query 17383 GAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG------ 17436 ||| || |||| | ||| ||||| || ||||||||| ||| | ||| Sbjct 229945 GAAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCC-TTGT--TCATGCGGTTGTT 229889 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 |||||| | | ||| ||||| | ||| | || |||| ||||| ||| ||| | || Sbjct 229888 CCAGTCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGC 229829 Query 17497 CTTTTTATACATATTCCAAAT 17517 ||| || ||||| | ||| || Sbjct 229828 CTTCTTGTACATCTGCCAGAT 229808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545405920400