Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq19 159 4e-34 seq18 113 5e-20 >seq19 Length=545716 Score = 159 bits (176), Expect = 4e-34 Identities = 459/699 (66%), Gaps = 14/699 (2%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||||| | ||| || ||| | || || || ||||| Sbjct 482288 CCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATG 482347 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 |||||||| |||||||| || || | || ||||| | || | | ||||| || || Sbjct 482348 AAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCG 482407 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| || || |||||| | | | ||| | |||||||| |||| ||| ||| Sbjct 482408 TGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATG 482467 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | ||||| || ||||| || ||||| || | ||| | || ||||| || | Sbjct 482468 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAC 482527 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | || ||| ||||| ||||| ||||| | ||| || || |||| || || ||| Sbjct 482528 ACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAGCCA 482587 Query 54281 CTGGCACGAATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 |||||||||| | ||||| |||| || || || ||||| || ||||| | | Sbjct 482588 GTGGCACGAATGCGGTGGACATTGA--GACCGATACCACCAGCCATCTTGGAGATCATAG 482645 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | || || | ||||| || |||||||| || || ||| |||||| || || | Sbjct 482646 CACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGA 482705 Query 54399 AACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 | || |||| | ||| | || | | ||||| || || | || || || ||| Sbjct 482706 AGCAAGAGGACA---GCTGA-GCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCG 482761 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTA-TATCCCA 54513 || || || | || ||| | || ||||||||||| ||| | ||| | | | || Sbjct 482762 TGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCTGTCA 482821 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573 ||| || || || |||||||| | ||||||||| || | || || |||||| Sbjct 482822 -CCCCAAATGCCGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCC 482880 Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 54633 || | ||||||| ||| || |||| || || || ||||| || | ||| || Sbjct 482881 GTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAA 482940 Query 54634 GTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 ||| || || || | ||| | |||| || | ||||| Sbjct 482941 GTCACGGTCATACACAATGGCCGAGTCCAGCTCTTCCTT 482979 >seq18 Length=564976 Score = 113 bits (124), Expect = 5e-20 Identities = 362/557 (65%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| ||||||||||| | ||| | ||||||||||| || || Sbjct 230364 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGA 230305 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || |||||||| ||||| || ||||| || || | || || ||||| Sbjct 230304 CCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAG 230245 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-ACCG--GCGCTGTCATGT 24311 || || || || || |||||||| | || | | || | || ||| ||| Sbjct 230244 ATACCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAA 230185 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||||| ||||||| |||||||| | ||||| || || || || || || Sbjct 230184 ATCCACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTG 230125 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 || || ||| | | | || || | || || || || | || ||| | Sbjct 230124 AACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTC 230065 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 ||||| || ||||| || || || || || |||||||| || | ||||||| ||| Sbjct 230064 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 230005 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || || || | || || || | || || || || || || ||||| || || Sbjct 230004 TGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCG 229945 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 24608 || || |||| || || || || || ||||||| || || | | || ||||| Sbjct 229944 AAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAG 229885 Query 24609 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668 || | | ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 229884 TCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGCCTTC 229825 Query 24669 TTATACATATTCCAGAT 24685 || ||||| | |||||| Sbjct 229824 TTGTACATCTGCCAGAT 229808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721377354400