Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1 132 6e-26 >seq1 Length=4116995 Score = 132 bits (146), Expect = 6e-26 Identities = 228/327 (70%), Gaps = 12/327 (4%) Strand=Plus/Plus Query 145534 AATTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAG 145593 ||||| |||| ||||| ||| | | ||| ||| |||| ||| ||||| | ||||| Sbjct 2530071 AATTACACCGACATCTTCATCGCCAAAGCCTTGTGCGGGTTGTATCCCTCAATGACAAAG 2530130 Query 145594 TCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGC-CTCAGG-------ATCCTGAGCC 145645 |||||| | | || |||| || || || ||| ||| | ||| ||||| Sbjct 2530131 TCCTCCAGCTTCCAGCCATCGATA--CTGCAGCCGGGCTCGCGTCCCTCCATCTTGAGCA 2530188 Query 145646 TGGGAAAGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGG 145704 ||| || | ||| || ||| | || | || | || || | ||| ||||| | || | Sbjct 2530189 GGGGGAAAGCCCGCGG-CTCACGCTCTATTTGCACCTGTAGCGCCTCGACGTGATCGACG 2530247 Query 145705 TAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGG 145764 |||||||||||||| |||| |||||| | | | || || | || ||||| | Sbjct 2530248 TAGACGTGCGCGTCGCCCATGACGTGCGTCAGGCTGCCCGGAACAAGATCCGTGGCTCGC 2530307 Query 145765 GCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATG 145824 || | ||||| || ||||| ||||| ||| |||||||||||||| || || |||||| Sbjct 2530308 GCAAGCATGTGTGTGAGCAGCGAGTACGAGGCAATGTTGAAGGGCACTCCAAGACCCATG 2530367 Query 145825 TCCCCCGAGCGCTGGTACAGCTGGCAG 145851 || | |||||||||||||||||||||| Sbjct 2530368 TCGCACGAGCGCTGGTACAGCTGGCAG 2530394 Score = 118 bits (130), Expect = 1e-21 Identities = 270/403 (67%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGC 145925 || ||||||||||||| | | ||| || |||||||| ||||| ||||||||| Sbjct 2530526 CGACACGTAGAACTGGGCAAACATGTGACACGGCGGCAGCGCCATCTTCTTCAGGTCCGC 2530585 Query 145926 CGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTAT 145985 ||| ||||| || | | | || | || | |||| | |||| | || | Sbjct 2530586 CGGATTCCACGCACTCATAATGATGCGTCTATCGTAGGGGGTGTTCTTCAGCTTGTGCAC 2530645 Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGC 146045 || || |||||||| || ||||| ||| ||| ||||||| | || || ||| | Sbjct 2530646 CACCTCTGCCAGCTGGTCGACACCCTGGCCCGTGTAGTCTGTCTGCGCATCGACATACTC 2530705 Query 146046 GGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTG 146105 || || || |||| ||||||||||||||| ||||| |||| ||| || ||| ||| Sbjct 2530706 TGCGCCAAAATGCCGCCACTGGAACCCGTACACGGGGCCCAAGTCGCCCTCGGCCCGGTG 2530765 Query 146106 CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC 146165 ||||| || | | | ||| | | || ||||||||| ||||||| ||||||| ||| Sbjct 2530766 GCCCAGGCCCACGCTGTTCAGGTACGCGCGCGACCCGTTGCCGTCCCATATCTTGATGCC 2530825 Query 146166 --CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCG 146223 | |||| ||| | || || ||| ||| |||||||| |||||||| | Sbjct 2530826 GGCTTCGCTGAGCG-GCA-GCGATGATGTGCTACCCTCAATGAACCACAGCAGCTCGGCT 2530883 Query 146224 AGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 | || | | |||||| | ||| |||||||| || |||| Sbjct 2530884 ATTACAGCGCGTGTGAAGACGCGCTTCGTGGTCAGGAGCGGGA 2530926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076578721200