Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq16 96.9 3e-15
seq6 86.0 5e-12
>seq16
Length=638914
Score = 96.9 bits (106), Expect = 3e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045
|||| |||||||| ||||| | |||||| || | ||||||||||| ||||| || | |
Sbjct 520932 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 520873
Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105
| || | |||||||||| ||| | ||| |||||||| |||||| || || | |
Sbjct 520872 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 520813
Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165
||| || || || ||| |||| |||||||||||| || || | || ||||| |
Sbjct 520812 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 520753
Query 21166 A 21166
|
Sbjct 520752 A 520752
>seq6
Length=1902109
Score = 86.0 bits (94), Expect = 5e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045
|||| || ||||| ||||| | ||| || || | ||||||||||| ||||| || | |
Sbjct 107617 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 107558
Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105
| || | |||||| ||| ||| | ||| |||||||| ||| || || || | |
Sbjct 107557 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGT 107498
Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165
||| ||| || || ||| || | |||||| ||||| || || | || ||||| |
Sbjct 107497 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 107438
Query 21166 ATATTTGCATTTTGA 21180
| || ||||| ||||
Sbjct 107437 AAATCTGCATCTTGA 107423
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| || | || |||||||| || ||||| ||||| | || || | | |||
Sbjct 700725 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCC 700666
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| ||||| || |||| || | |||||||||| || | || ||||||||
Sbjct 700665 TCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 700606
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||| || || | | ||| ||||| | ||| ||| | |||||||||
Sbjct 700605 TGAATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGAGTAATGGTC 700546
Query 21144 TTGCCGGTTAACGTTTTGACAAATAT 21169
|||||||| | || ||||| | |||
Sbjct 700545 TTGCCGGTGAGGGTCTTGACGACTAT 700520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422259045611480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |