Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq18 381 6e-101 seq6 127 2e-24 seq16 118 1e-21 >seq18 Length=564976 Score = 381 bits (422), Expect = 6e-101 Identities = 531/737 (72%), Gaps = 13/737 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||||||| | || ||| Sbjct 229808 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACGGCCGAGGAGATTGATCTG 229867 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | ||| ||||| | |||| | |||||| | Sbjct 229868 TCCAAGGATCTTCACGACTGGAACAACCGCATGAACAAGGACGAAAAGTACTTCATCTCG 229927 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| |||||||| ||||| || |||||||| ||||||||||| ||||||||||| Sbjct 229928 CACGTCCTGGCCTTCTTCGCTGCTTCGGACGGCATTGTCAACGAGAACTTGGTCGAGCGT 229987 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| ||| | ||||||| || |||||||||||||| |||||| ||| Sbjct 229988 TTCTCGGGTGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATG 230047 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | |||||||| | ||| ||| ||||||||||| ||| | | || || | Sbjct 230048 GAGAACATCCACTCGGAGACGTACTCGCTGCTCATCGACACCTACATCAAGGAGC-CTGC 230106 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 || | |||| | | ||| ||||||||||| || || || ||| | ||||| Sbjct 230107 CCAGC-GCAGCTACCT--GTTCAACGCCATCGACACCATTCCTTGCATTCGCCGCAAGGC 230163 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||| ||||| || ||||| ||| | | ||| | |||| | | |||| |||||||| Sbjct 230164 CGACTGGGCTCTCAAGTGGATTTCCGACCGCGAGTCGACCTTTGCCCAGCGTCTGGTGGC 230223 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||| || ||||||||||| ||||||| |||||| ||||||| |||| || ||||| Sbjct 230224 CTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCGCTTTCGCCTCCATTTTCTGGCTGCG 230283 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 || || || || |||||||| ||||| || ||||||||| || || | |||||||| Sbjct 230284 CAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGTGACGAGGG 230343 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 |||||| |||||||||||| |||| ||| ||| || || || ||| | Sbjct 230344 TCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACACCCGCCCTAGCAAGAA 230403 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 || || ||||||| ||||||| || || | ||| ||| || ||||| ||||| || Sbjct 230404 GCTTGTTGAGGAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCCTGACCGAGGC 230463 Query 117289 GCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 ||||| |||| ||||| || | || ||| ||| ||| ||||| ||||| | Sbjct 230464 TCTGCC-TTGCGCCCTGCTTGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTTG 230522 Query 117348 TCGCCGACAGGCTGCTG 117364 |||||||| | |||||| Sbjct 230523 TCGCCGACCGTCTGCTG 230539 >seq6 Length=1902109 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 |||||||| |||||||| | || |||||| | |||||| | | | |||| ||||| Sbjct 700253 ACGGGCAAGACCATCACGCTAGAGGTCGAATCTTCCGACACCATCGACAACG-TCAAGTC 700311 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| || || ||||||||||||| ||||| | ||| || || Sbjct 700312 CAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAACGTCTCATTTTCGCTGGTAA 700371 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| || | || || || |||||||||||||||||||||| |||| || || Sbjct 700372 GCAGCTGGAGGATGGTCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCCACCCTCCA 700431 Query 40893 TCTAGTGTTGCG 40904 ||||| |||| Sbjct 700432 CCTAGTCCTGCG 700443 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| |||||||| | || |||||| | | Sbjct 700970 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTAGAGGTCGAATCGTCG 701029 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | ||||| || |||| ||||| ||||| || || ||||||| Sbjct 701030 GACACGATTGACAATG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 701088 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| || | || || || ||| ||||| Sbjct 701089 GCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCCGATTACAA 701148 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || |||||||| || ||||| || | || ||| Sbjct 701149 CATCCAGAAGGAGTCGACTCTGCATCTGGTTCTGCGCCTGCGTGGTGGC 701197 Score = 122 bits (134), Expect = 9e-23 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || || ||| |||| || || || Sbjct 107425 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 107484 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | ||||| ||||| | ||||| |||||||| ||| |||| Sbjct 107485 TCGGACACTATCGACAATGTCAAGTCCAAAATCCAGGACAAGGAGGGCATTCCCCCGGAT 107544 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 107545 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 107604 Query 40867 AACATCCAGAAGG-AGGCCACGCTGCATC 40894 ||||||||||||| || || ||||||| Sbjct 107605 AACATCCAGAAGGTCAGCAACCCTGCATC 107633 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 ||| |||| || || ||||| ||||| ||||| || |||| ||||| | | || | | Sbjct 700520 ATAGTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAAGTCGAGTCGTCGGATACC 700579 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| ||||| || |||| ||||| ||||| || || |||||||||| || Sbjct 700580 ATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCG 700638 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 || || | ||| ||||| ||||| || || | ||||| || |||||||||||||| Sbjct 700639 TCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCTGACTACAACATCCA 700698 Query 40875 GAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||| | || || || || ||| Sbjct 700699 GAAGGAGTCTACCCTCCACCTGGTG 700723 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || || |||||| | || || || | | Sbjct 700742 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTTGAGGTGGAGTCATCG 700801 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || || | ||||| |||||||| || |||||||| Sbjct 700802 GATACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 700861 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||||| || || | ||||| || |||||||||| Sbjct 700862 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCCGACTACAAC 700921 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || |||||||| || Sbjct 700922 ATCCAGAAGGAGTCTACTCTGCATCTGGT 700950 >seq16 Length=638914 Score = 118 bits (130), Expect = 1e-21 Identities = 137/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 520752 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 520811 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 520812 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 520870 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| |||||||| || | |||||||| |||||||||||| ||||| Sbjct 520871 GATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAA 520930 Query 40878 GG 40879 || Sbjct 520931 GG 520932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219006792800