Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq18 381 6e-101
seq6 127 2e-24
seq16 118 1e-21
>seq18
Length=564976
Score = 381 bits (422), Expect = 6e-101
Identities = 531/737 (72%), Gaps = 13/737 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | ||||||| | || |||
Sbjct 229808 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACGGCCGAGGAGATTGATCTG 229867
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| ||||||| | ||| ||||| | |||| | |||||| |
Sbjct 229868 TCCAAGGATCTTCACGACTGGAACAACCGCATGAACAAGGACGAAAAGTACTTCATCTCG 229927
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| |||||||| ||||| || |||||||| ||||||||||| |||||||||||
Sbjct 229928 CACGTCCTGGCCTTCTTCGCTGCTTCGGACGGCATTGTCAACGAGAACTTGGTCGAGCGT 229987
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | ||||| ||| | ||||||| || |||||||||||||| |||||| |||
Sbjct 229988 TTCTCGGGTGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATG 230047
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928
|||||| | |||||||| | ||| ||| ||||||||||| ||| | | || || |
Sbjct 230048 GAGAACATCCACTCGGAGACGTACTCGCTGCTCATCGACACCTACATCAAGGAGC-CTGC 230106
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988
|| | |||| | | ||| ||||||||||| || || || ||| | |||||
Sbjct 230107 CCAGC-GCAGCTACCT--GTTCAACGCCATCGACACCATTCCTTGCATTCGCCGCAAGGC 230163
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048
||| ||||| || ||||| ||| | | ||| | |||| | | |||| ||||||||
Sbjct 230164 CGACTGGGCTCTCAAGTGGATTTCCGACCGCGAGTCGACCTTTGCCCAGCGTCTGGTGGC 230223
Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108
||| || ||||||||||| ||||||| |||||| ||||||| |||| || |||||
Sbjct 230224 CTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCGCTTTCGCCTCCATTTTCTGGCTGCG 230283
Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168
|| || || || |||||||| ||||| || ||||||||| || || | ||||||||
Sbjct 230284 CAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGTGACGAGGG 230343
Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228
|||||| |||||||||||| |||| ||| ||| || || || ||| |
Sbjct 230344 TCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACACCCGCCCTAGCAAGAA 230403
Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288
|| || ||||||| ||||||| || || | ||| ||| || ||||| ||||| ||
Sbjct 230404 GCTTGTTGAGGAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCCTGACCGAGGC 230463
Query 117289 GCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347
||||| |||| ||||| || | || ||| ||| ||| ||||| ||||| |
Sbjct 230464 TCTGCC-TTGCGCCCTGCTTGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTTG 230522
Query 117348 TCGCCGACAGGCTGCTG 117364
|||||||| | ||||||
Sbjct 230523 TCGCCGACCGTCTGCTG 230539
>seq6
Length=1902109
Score = 127 bits (140), Expect = 2e-24
Identities = 145/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|||||||| |||||||| | || |||||| | |||||| | | | |||| |||||
Sbjct 700253 ACGGGCAAGACCATCACGCTAGAGGTCGAATCTTCCGACACCATCGACAACG-TCAAGTC 700311
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | ||||| ||||| || || ||||||||||||| ||||| | ||| || ||
Sbjct 700312 CAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAACGTCTCATTTTCGCTGGTAA 700371
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||| || | || || || |||||||||||||||||||||| |||| || ||
Sbjct 700372 GCAGCTGGAGGATGGTCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCCACCCTCCA 700431
Query 40893 TCTAGTGTTGCG 40904
||||| ||||
Sbjct 700432 CCTAGTCCTGCG 700443
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || ||||| || ||||| |||||||| | || |||||| | |
Sbjct 700970 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTAGAGGTCGAATCGTCG 701029
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || || | ||||| || |||| ||||| ||||| || || |||||||
Sbjct 701030 GACACGATTGACAATG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 701088
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || || || |||||||| || | || || || ||| |||||
Sbjct 701089 GCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCCGATTACAA 701148
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| | || |||||||| || ||||| || | || |||
Sbjct 701149 CATCCAGAAGGAGTCGACTCTGCATCTGGTTCTGCGCCTGCGTGGTGGC 701197
Score = 122 bits (134), Expect = 9e-23
Identities = 153/209 (73%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || || ||||| || || || ||| |||| || || ||
Sbjct 107425 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 107484
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | ||||| ||||| | ||||| |||||||| ||| ||||
Sbjct 107485 TCGGACACTATCGACAATGTCAAGTCCAAAATCCAGGACAAGGAGGGCATTCCCCCGGAT 107544
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 107545 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 107604
Query 40867 AACATCCAGAAGG-AGGCCACGCTGCATC 40894
||||||||||||| || || |||||||
Sbjct 107605 AACATCCAGAAGGTCAGCAACCCTGCATC 107633
Score = 111 bits (122), Expect = 2e-19
Identities = 149/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755
||| |||| || || ||||| ||||| ||||| || |||| ||||| | | || | |
Sbjct 700520 ATAGTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAAGTCGAGTCGTCGGATACC 700579
Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814
| | |||| ||||| || |||| ||||| ||||| || || |||||||||| ||
Sbjct 700580 ATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCG 700638
Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874
|| || | ||| ||||| ||||| || || | ||||| || ||||||||||||||
Sbjct 700639 TCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCTGACTACAACATCCA 700698
Query 40875 GAAGGAGGCCACGCTGCATCTAGTG 40899
||||||| | || || || || |||
Sbjct 700699 GAAGGAGTCTACCCTCCACCTGGTG 700723
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || || || |||||| | || || || | |
Sbjct 700742 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTTGAGGTGGAGTCATCG 700801
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || || | ||||| |||||||| || ||||||||
Sbjct 700802 GATACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 700861
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | ||| ||||| ||||| || || | ||||| || ||||||||||
Sbjct 700862 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCCGACTACAAC 700921
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | || |||||||| ||
Sbjct 700922 ATCCAGAAGGAGTCTACTCTGCATCTGGT 700950
>seq16
Length=638914
Score = 118 bits (130), Expect = 1e-21
Identities = 137/182 (75%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| || | |||| |
Sbjct 520752 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 520811
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| ||||| || || | ||||| |||||||| ||| |||||||||| || ||
Sbjct 520812 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 520870
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| ||| ||||| |||||||| || | |||||||| |||||||||||| |||||
Sbjct 520871 GATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAA 520930
Query 40878 GG 40879
||
Sbjct 520931 GG 520932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219006792800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |