Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq6 132 4e-26
seq16 111 1e-19
seq18 102 7e-17
>seq6
Length=1902109
Score = 132 bits (146), Expect = 4e-26
Identities = 142/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| || |||||| |||||| ||||| || |||||| ||||
Sbjct 107615 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 107556
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| ||||||||||| || || |||||||||||||| ||||| || || | |||
Sbjct 107555 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGTCG 107496
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||||| | ||| ||||||| ||| | ||| || || ||||| || || || |||
Sbjct 107495 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 107436
Query 118731 ATCTGCAT 118738
||||||||
Sbjct 107435 ATCTGCAT 107428
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || |||||||| ||| | |||||| |||||| ||||| || ||
Sbjct 700938 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCAAGCTGCTTGCCG 700879
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || ||||||||||| || ||||| |||||||||||||| || || ||
Sbjct 700878 GCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 700819
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||| |||| ||| ||||| | ||| | || || ||||| |||||
Sbjct 700818 ACATTGTCAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCTTTCCGGTAAGAGTC 700759
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| ||||||||
Sbjct 700758 TTGACAAAGATCTGCAT 700742
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||||| |||||||| || || |||||||| || | |||||| ||||||
Sbjct 700723 CACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTC 700664
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| | || ||||||||||| || ||||| || |||||||||||
Sbjct 700663 AAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 700604
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || || || | |||| ||| |||| |||||| |||| || | || ||
Sbjct 700603 AATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGAGTAATGGTCTT 700544
Query 118709 GCCGGTCAGAGTTTTTAC 118726
|||||| || || || ||
Sbjct 700543 GCCGGTGAGGGTCTTGAC 700526
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||||||| | || || |||||| ||||| || |||
Sbjct 701166 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTACGGCCATCCTCCAGCTGCTTACCA 701107
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| ||||||||||| || ||||| || ||||||||||| ||| || ||
Sbjct 701106 GCAAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 701047
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||||||| |||||||| | || | || ||||| ||||| ||
Sbjct 701046 ACATTGTCAATCGTGTCCGACGATTCGACCTCTAGCGTGATGGTCTTGCCAGTCAGCGTC 700987
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| ||||||||
Sbjct 700986 TTCACAAAGATCTGCAT 700970
Score = 89.7 bits (98), Expect = 4e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| ||| | ||| || |||||| |||||
Sbjct 700432 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCCAGCTG 700373
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| |||||| | |||||||| ||||| || ||||| || ||||||||||| || ||
Sbjct 700372 CTTACCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTT 700313
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| |||||| | |||||||| | || | || ||||| ||
Sbjct 700312 GGACTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCTAGCGTGATGGTCTTGCCCGT 700253
Query 118715 CA 118716
||
Sbjct 700252 CA 700251
>seq16
Length=638914
Score = 111 bits (122), Expect = 1e-19
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| ||||||||||| ||| || ||||| |||||| ||||| || |||||| ||||
Sbjct 520930 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 520871
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
||||||||||| || || || |||||||||||||| || || || || | |||
Sbjct 520870 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 520811
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||||| | ||||||||| | ||| | || || || ||||| || || || |||
Sbjct 520810 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 520751
Query 118731 ATCTGC 118736
| |||
Sbjct 520750 CTGTGC 520745
>seq18
Length=564976
Score = 102 bits (112), Expect = 7e-17
Identities = 275/417 (66%), Gaps = 13/417 (3%)
Strand=Plus/Plus
Query 44778 TCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATG 44837
|||| | || || ||| | ||| | |||||||| ||||| | |||| ||| |||
Sbjct 230133 TCGACACCATTCCTTGCATTCGCCGCAAGGCCGACTGGGCTCTCAAGTGGATTTCCGACC 230192
Query 44838 AAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTT 44897
|| || || ||| | || |||| || || ||| ||||| || | ||||| |
Sbjct 230193 GCGAGTCGACCTTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCT 230252
Query 44898 CGGGGAGTTTTGCGGCGATATTTTACATGAAAACCAAGGGAG---TGATGCCCGGACTGA 44954
|||| ||| || | || || | || |||| | | |||||||||| ||||
Sbjct 230253 CGGGCGCTTTCGCCTCCATTTTCTGGCTGCG---CAAGCGTGGTCTGATGCCCGGTCTGA 230309
Query 44955 CGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCT-C 45013
| ||| |||||| |||||||| | ||||| |||||||||||| ||||||||||||| |
Sbjct 230310 CCTTTTCCAACGAGCTGATTTCGCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTGC 230369
Query 45014 TACTATAATACGAG-AGTCGATCAAAAGTTGGACGCGCCCACCGTCAACGACATGTTCTC 45072
| | | || | | | | || || || || | || || || |
Sbjct 230370 TCTTCTCGCACCTGAACACCCGCCCTAGCAAGAAGC-----TTGTTGAGGAGATCATCAC 230424
Query 45073 CGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGG 45132
||| ||||| | ||| |||| ||| || | | ||||||||||| | || | ||
Sbjct 230425 CGATGCCGTTGTCATTGAGAAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCCCTGCTTGG 230484
Query 45133 AATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGT 45189
|||||||| | | |||| |||||||||||||||||||||| ||||| || ||
Sbjct 230485 CATGAACGCCGACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGT 230541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830241380760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |