Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 132 4e-26 seq16 111 1e-19 seq18 102 7e-17 >seq6 Length=1902109 Score = 132 bits (146), Expect = 4e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || |||||| |||||| ||||| || |||||| |||| Sbjct 107615 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 107556 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||||||||| || || |||||||||||||| ||||| || || | ||| Sbjct 107555 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGTCG 107496 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||| ||||||| ||| | ||| || || ||||| || || || ||| Sbjct 107495 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 107436 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 107435 ATCTGCAT 107428 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| ||| | |||||| |||||| ||||| || || Sbjct 700938 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCAAGCTGCTTGCCG 700879 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || ||||||||||| || ||||| |||||||||||||| || || || Sbjct 700878 GCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 700819 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| |||| ||| ||||| | ||| | || || ||||| ||||| Sbjct 700818 ACATTGTCAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCTTTCCGGTAAGAGTC 700759 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 700758 TTGACAAAGATCTGCAT 700742 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| |||||||| || || |||||||| || | |||||| |||||| Sbjct 700723 CACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTC 700664 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| | || ||||||||||| || ||||| || ||||||||||| Sbjct 700663 AAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 700604 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||| |||| |||||| |||| || | || || Sbjct 700603 AATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGAGTAATGGTCTT 700544 Query 118709 GCCGGTCAGAGTTTTTAC 118726 |||||| || || || || Sbjct 700543 GCCGGTGAGGGTCTTGAC 700526 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||||||| | || || |||||| ||||| || ||| Sbjct 701166 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTACGGCCATCCTCCAGCTGCTTACCA 701107 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||||||||| || ||||| || ||||||||||| ||| || || Sbjct 701106 GCAAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 701047 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||||| |||||||| | || | || ||||| ||||| || Sbjct 701046 ACATTGTCAATCGTGTCCGACGATTCGACCTCTAGCGTGATGGTCTTGCCAGTCAGCGTC 700987 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 700986 TTCACAAAGATCTGCAT 700970 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||| || |||||| ||||| Sbjct 700432 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCCAGCTG 700373 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | |||||||| ||||| || ||||| || ||||||||||| || || Sbjct 700372 CTTACCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTT 700313 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | |||||||| | || | || ||||| || Sbjct 700312 GGACTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCTAGCGTGATGGTCTTGCCCGT 700253 Query 118715 CA 118716 || Sbjct 700252 CA 700251 >seq16 Length=638914 Score = 111 bits (122), Expect = 1e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| || ||||| |||||| ||||| || |||||| |||| Sbjct 520930 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 520871 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || || || |||||||||||||| || || || || | ||| Sbjct 520870 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 520811 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | || || || ||||| || || || ||| Sbjct 520810 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 520751 Query 118731 ATCTGC 118736 | ||| Sbjct 520750 CTGTGC 520745 >seq18 Length=564976 Score = 102 bits (112), Expect = 7e-17 Identities = 275/417 (66%), Gaps = 13/417 (3%) Strand=Plus/Plus Query 44778 TCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATG 44837 |||| | || || ||| | ||| | |||||||| ||||| | |||| ||| ||| Sbjct 230133 TCGACACCATTCCTTGCATTCGCCGCAAGGCCGACTGGGCTCTCAAGTGGATTTCCGACC 230192 Query 44838 AAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTT 44897 || || || ||| | || |||| || || ||| ||||| || | ||||| | Sbjct 230193 GCGAGTCGACCTTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCT 230252 Query 44898 CGGGGAGTTTTGCGGCGATATTTTACATGAAAACCAAGGGAG---TGATGCCCGGACTGA 44954 |||| ||| || | || || | || |||| | | |||||||||| |||| Sbjct 230253 CGGGCGCTTTCGCCTCCATTTTCTGGCTGCG---CAAGCGTGGTCTGATGCCCGGTCTGA 230309 Query 44955 CGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCT-C 45013 | ||| |||||| |||||||| | ||||| |||||||||||| ||||||||||||| | Sbjct 230310 CCTTTTCCAACGAGCTGATTTCGCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTGC 230369 Query 45014 TACTATAATACGAG-AGTCGATCAAAAGTTGGACGCGCCCACCGTCAACGACATGTTCTC 45072 | | | || | | | | || || || || | || || || | Sbjct 230370 TCTTCTCGCACCTGAACACCCGCCCTAGCAAGAAGC-----TTGTTGAGGAGATCATCAC 230424 Query 45073 CGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGG 45132 ||| ||||| | ||| |||| ||| || | | ||||||||||| | || | || Sbjct 230425 CGATGCCGTTGTCATTGAGAAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCCCTGCTTGG 230484 Query 45133 AATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGT 45189 |||||||| | | |||| |||||||||||||||||||||| ||||| || || Sbjct 230485 CATGAACGCCGACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGT 230541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830241380760