Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq6 140 2e-28
seq16 98.7 6e-16
>seq6
Length=1902109
Score = 140 bits (154), Expect = 2e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| ||||| || | ||| || ||||| |||||||| |||||
Sbjct 701196 CCACCACGCAGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 701137
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| |||| | || |||| |||||| || || || || || ||||||||||| ||
Sbjct 701136 AGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGA 701077
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | || | | |||| || | |||||||||
Sbjct 701076 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGATTCGACC 701017
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||||||| ||||| || || || |||||||||||||||||
Sbjct 701016 TCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970
Score = 116 bits (128), Expect = 2e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| ||||| || | |||| || ||||| |||||||||||||| || || | ||
Sbjct 700953 AGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCC 700894
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| |||||||| || ||||||||||| || | || |||||||||
Sbjct 700893 TCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 700834
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | ||| | || || || || | ||||| ||
Sbjct 700833 TGGATCTTCGACTTGACATTGTCAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTC 700774
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| ||||| ||||| || ||||||||||||||
Sbjct 700773 TTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| || ||||| | || || ||||| ||||||||||||||
Sbjct 700455 CCACCACGCAGACGCAGGACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 700396
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| |||||| || ||||||||||| || |||||||| ||
Sbjct 700395 AGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGTTGCTGGTCCGGAGGA 700336
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | || | |||| ||||||||
Sbjct 700335 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCGACC 700276
Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365
|| | ||||||||| ||||| ||
Sbjct 700275 TCTAGCGTGATGGTCTTGCCCGT 700253
Score = 100 bits (110), Expect = 2e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||||||| | ||| || ||||| ||||||||||| || || || | ||
Sbjct 700725 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCC 700666
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| |||||||| || ||||||||||| || | | |||||||||
Sbjct 700665 TCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 700606
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | ||| | ||| ||||| || | || |||||
Sbjct 700605 TGAATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGAGTAATGGTC 700546
Query 34358 TTGCCGGTGAGAGTTTTCAC 34377
||||||||||| || || ||
Sbjct 700545 TTGCCGGTGAGGGTCTTGAC 700526
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/191 (71%), Gaps = 4/191 (2%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| ||||||||||||||||| ||| | || |||| ||||||||| ||||| ||
Sbjct 107615 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 107556
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGG 34319
|| |||||||| || ||| | || ||||||||| || ||||| ||| | || |
Sbjct 107555 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTC--CTGGATTTTGGACTTGACATTGT 107498
Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379
| || | || | || || || || | || || || || || || || || || || |
Sbjct 107497 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 107438
Query 34380 AGATCTGCATC 34390
| |||||||||
Sbjct 107437 AAATCTGCATC 107427
>seq16
Length=638914
Score = 98.7 bits (108), Expect = 6e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| ||||||||||||||||| ||| | || |||| ||||||||| ||||| ||
Sbjct 520930 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 520871
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| ||||||||||| ||| | || ||||||||| ||||| ||| | | | |
Sbjct 520870 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 520811
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|||| || | || ||||| |||| || ||||| || || || || || || || ||
Sbjct 520810 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 520752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071881876800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |