Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq19 437 8e-118
seq18 235 5e-57
seq6 109 5e-19
seq16 87.8 2e-12
>seq19
Length=545716
Score = 437 bits (484), Expect = 8e-118
Identities = 1238/1885 (66%), Gaps = 32/1885 (2%)
Strand=Plus/Plus
Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164
|| ||| || || ||||| |||| || |||| | || || || || ||||||||
Sbjct 481096 CTGGTCAACAGTGAACTGAATGGGCGCCGCAGCCGCCTGCGTACGCAGGTAGTACATGCC 481155
Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAAC-TCG 22223
|||||| ||||||| |||||| | ||| || || || ||| || | | | | |
Sbjct 481156 CGTCTTGAGACCCAGCTTCCAGCCCGCAAAGTGCATGCTGGT-AATCTTGCCCATCGTAG 481214
Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283
| | ||||| | |||| |||||| ||| |||||||| || || ||||| || |
Sbjct 481215 GGTCCTTCATGTGAATGTTGAGCGACTGGGACTGGTCGATAAAGGCACCACGATCAGCAG 481274
Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343
|||| | | | |||||| ||| || ||||| || ||||||||||| | |||| |
Sbjct 481275 CCATCTGCACAACCGTACGCTGCGAAATCTCCCACACAGTCTTGTACAGCGCCTTGATAT 481334
Query 22344 CTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402
| || || | | || | |||||| || ||||| | ||||| || ||
Sbjct 481335 CGTCGGGAAT-GCTGGGAATGTTCTGGATAGATCCGTTCTCCGCAATGATGCGGTTCTTC 481393
Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462
|| | || ||||| ||| | | | || ||| | ||| | |||| || ||
Sbjct 481394 ATGTTGTCCGACCACAGACCCAGGTCCACCAGATCACGCAGCAGCCAAGGGTTGACAACC 481453
Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522
|| |||||||| | || || || || |||||||||||||| ||| |||| || || |
Sbjct 481454 TGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAAAGCAC 481513
Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582
|| ||||| ||||| ||||| | || || |||||||||||||| | ||| ||||||
Sbjct 481514 TCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGAAGCGAG 481573
Query 22583 TTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCG 22639
|| | || |||| || |||| | | ||| |||||| || ||||||||| || |||
Sbjct 481574 TTGCGCACACCGTTCTGCTTGA---TCTGCTCCTTGAGCGACGCCCAGTCCCAGAGGTCG 481630
Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699
||||| ||||| |||||| ||| | |||| | ||| || | || ||
Sbjct 481631 CTGGGCGTGACATT---CCACATGTCGAACTGCAGGATGCCCTGAGAAACGGGCGAACCC 481687
Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCG-CCTCCAACGCGCC 22758
|| ||||| ||| | ||| | | ||||| ||| || | | || || || |
Sbjct 481688 TCATACGTAGAGTAGGTACCCTCCTCCTTGGCAATTTC-CATCGAGGCCGTCAGGGCAGC 481746
Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGC-GACGCTTTCGT 22814
|| || || || || ||||| | |||| | | | || |||| ||| ||
Sbjct 481747 GTGGTAGATGGTTTCAAAGATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGAC----TCAA 481802
Query 22815 ACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTC 22874
| ||||| |||| | || ||| || || |||| ||||||||| || | ||| || || |
Sbjct 481803 AAGGCATGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGAACACCAACACCAATGGGAC 481862
Query 22875 GGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932
||| || || | || || |||| |||| || || || || || |
Sbjct 481863 GGTGACGCATGTTG--CTGTTGTGGGCCTCAGGCACGGGGTAGTGGTTGACGTCAATGAT 481920
Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992
| ||||| ||| | |||| || || | | |||||||| |
Sbjct 481921 GCGGTTCAGGTTGCGCACAACAACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTACTC 481980
Query 22993 GCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCAC 23049
| | ||||| | |||||| | || | ||| || || ||||| ||||| ||
Sbjct 481981 GTTCTTGTTGTAGTCGACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGCACACGGCAAC 482040
Query 23050 CTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCC 23109
||| || | |||||| | ||| || || || || ||| | || || ||
Sbjct 482041 CTCATCAGGCGCACAGTACTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACC 482100
Query 23110 CAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCC 23169
|| || |||||||||| || || ||||| |||||||| |||||| |||| ||||
Sbjct 482101 CAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCC 482160
Query 23170 CGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCAC 23229
|||||| ||| | ||| | || || ||||| |||| || | | || ||| |
Sbjct 482161 TGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGAT-CGACGCGC 482219
Query 23230 GTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGT 23288
| | | ||| |||| ||||||||||| ||||| || ||||| || | ||||| || |
Sbjct 482220 GGCCACGGCCCTCTTGCTCGTACTTTTCGTACAGGGCCTCAAACTCCTCGCCGTAGCAAT 482279
Query 23289 CGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGC 23348
| |||||||| || | | | || ||||| || |||| | || || || || |
Sbjct 482280 CAGCCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACAC 482339
Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408
| |||| || ||||| || ||||| || || ||| || ||||||||||| |||||||
Sbjct 482340 GCTTCATGAAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCT 482399
Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468
| |||||| |||||| || || | || || ||||| ||||| ||||||||||| |
Sbjct 482400 CCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCA 482459
Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528
|||||| |||||| || || || | ||| ||||| ||||| |||||||| ||||| ||||
Sbjct 482460 GGTAAATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGT 482519
Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588
||||| |||| | ||||| || | || ||||||||| | ||| | ||| || |
Sbjct 482520 TGTTGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGT 482579
Query 23589 TCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATA 23648
||| || | || |||| | ||| || | || ||| || || || || || || |
Sbjct 482580 ACGAGCCAGTGGCACGAATGCGGTGGACATTGAGACCGATACCACCAGCCATCTTGGAGA 482639
Query 23649 TCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGA 23708
|||| || || || ||||| ||||| ||||||||||| ||| || || | | |
Sbjct 482640 TCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAA 482699
Query 23709 CCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGG 23768
||| ||| || || |||| || || | ||||||| | || ||| || || || ||
Sbjct 482700 CCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGG 482759
Query 23769 CGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCT 23828
|||| || ||| | | ||||| || |||||||| || || | |||| |
Sbjct 482760 CGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCTGT 482819
Query 23829 CTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGC 23888
| || || |||| || || ||||| ||||||| || || | |||||| | ||
Sbjct 482820 CACCCCAAATGCCGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGC 482879
Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948
||| | || | ||| || ||||| | || || || || ||||| || | ||||| |
Sbjct 482880 CGTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGA 482939
Query 23949 AGTCACGATCGTGCACTATGGCCGA 23973
||||||| || | ||| ||||||||
Sbjct 482940 AGTCACGGTCATACACAATGGCCGA 482964
>seq18
Length=564976
Score = 235 bits (260), Expect = 5e-57
Identities = 567/839 (68%), Gaps = 27/839 (3%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || || || || ||||| | ||| || | || |||
Sbjct 229808 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACGGCCGAGGAGATTGATCTG 229867
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCA--AAGAATCTGA-GAGAAAT--TTTATTA 57684
|| |||||||| ||| ||| | || || || || || || || | || ||
Sbjct 229868 TCCAAGGATCTTCACGACTGGAACAACCGCATGAACAAG--GACGAAAAGTACTTCATCT 229925
Query 57685 AACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAA 57744
||||| |||| || ||||| || || || || ||||| |||||||| ||||||||
Sbjct 229926 CGCACGTCCTGGCCTTCTTCGCTGCTTCGGACGGCATTGTCAACGAGAACTTGGTCGAGC 229985
Query 57745 GATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804
| || || || || || | | ||||| | ||||| ||||| || || | |
Sbjct 229986 GTTTCTCGGGTGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 230045
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864
| || ||| | || || || | ||| ||||| |||||||| || ||| | ||||| |
Sbjct 230046 TGGAGAACATCCACTCGGAGACGTACTCGCTGCTCATCGACACCTACATCAAGGAGCCTG 230105
Query 57865 ACGAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAG 57920
| || || || ||||||||||| ||||| || || || || ||||| |||
Sbjct 230106 CCCAG---CGCAGCTACCTGTTCAACGCCATCGACACCATTCCTTGCATTCGCCGC-AAG 230161
Query 57921 GCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979
|| || ||| | |||| ||||| | ||| | | | || || ||| || | || |
Sbjct 230162 GCCGACTGGGCTCTCAAGTGGATTTCCGACCGCGA-GTCGACCTTTGCCCAGCGTCTGGT 230220
Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATATTTTGGA 58038
|| || ||||||||||| ||||| ||||| |||||| ||||| || | || || |||
Sbjct 230221 GGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGC-GCTTTCGCCTCCATTTTCTGGC 230279
Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098
|| || || || ||||||||||| ||||| ||| ||||||| |||| ||||| ||||
Sbjct 230280 TGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGTGACG 230339
Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158
||||||| || || || ||||| ||||| | | ||| ||| | || || | ||
Sbjct 230340 AGGGTCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACACCCGCCCTA-GC 230398
Query 58159 GGGATCGCATCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216
|| || | || ||| || |||||||| || || | || || || ||||| | ||
Sbjct 230399 AAGA-AGCTTGTTGAGGAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCCTGAC 230457
Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276
||| || || || ||| |||| || |||||| || | ||| ||||||||||
Sbjct 230458 CGAGGCTCTGCCTTGCGCCCTGCTTGGCATGAACGCCGACCTCATGAAGCAGTACATTGA 230517
Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAA 58334
|||||| |||||| | || || | | || | |||| ||| ||| | | |
Sbjct 230518 GTTTGTCGCCGACCGTCTGCTGGTTGCCCTTGGCAACGAGAAGGTC--TACCGCTCCACG 230575
Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393
|| || ||||| || ||| | |||||||| | || ||||| ||||| ||||| ||
Sbjct 230576 AACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGTAAGACCAACTTCTTCGAGAA 230634
>seq6
Length=1902109
Score = 109 bits (120), Expect = 5e-19
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| ||||| || || ||||| ||| |||| ||||| |
Sbjct 107425 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 107484
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| | |||| | ||||| | ||| ||||||||| ||| | || || ||
Sbjct 107485 TCGGACACTATCGACAATGTCAAGTCCAAAATCCAGGACAAGGAGGGCATTCCCCCGGAT 107544
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || ||||||||||| ||| |||| ||
Sbjct 107545 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 107582
Score = 105 bits (116), Expect = 6e-18
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||| ||||| || ||||| | || || ||| ||||
Sbjct 700970 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTAGAGGTCGAATCGTCG 701029
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| || || ||||||||| || | || || ||||||
Sbjct 701030 GACACGATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 701089
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369
|||||||| || || ||||| || ||| |||| || | || | || | ||||||
Sbjct 701090 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACG-CTTT--CCGATTAC 701146
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || |||||||| |||||||| ||
Sbjct 701147 AACATCCAGAAGGAGTCGACTCTGCATCTGGTTCT 701181
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || |||||||| || || || || |||||| | || || || | ||
Sbjct 700742 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTTGAGGTGGAGTCATCG 700801
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | ||||| || || ||||||||| ||| | || || ||||||
Sbjct 700802 GATACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 700861
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| ||||| ||| | || || | ||| | ||| || |||
Sbjct 700862 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCCGACTACAAC 700921
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || || ||||| |||||||| ||
Sbjct 700922 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCT 700953
>seq16
Length=638914
Score = 87.8 bits (96), Expect = 2e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254
||| | |||||| ||||| ||||| || || || || ||| | || || || | || ||
Sbjct 520745 GCACAGTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGA 520804
Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314
|| |||| | ||||| | || ||||||||| ||| | || || ||||||||
Sbjct 520805 CACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCA 520864
Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||| || ||||||||||| ||| |||| ||
Sbjct 520865 GCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGA 520897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766232837600
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