Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq19 437 8e-118 seq18 235 5e-57 seq6 109 5e-19 seq16 87.8 2e-12 >seq19 Length=545716 Score = 437 bits (484), Expect = 8e-118 Identities = 1238/1885 (66%), Gaps = 32/1885 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| |||| || |||| | || || || || |||||||| Sbjct 481096 CTGGTCAACAGTGAACTGAATGGGCGCCGCAGCCGCCTGCGTACGCAGGTAGTACATGCC 481155 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAAC-TCG 22223 |||||| ||||||| |||||| | ||| || || || ||| || | | | | | Sbjct 481156 CGTCTTGAGACCCAGCTTCCAGCCCGCAAAGTGCATGCTGGT-AATCTTGCCCATCGTAG 481214 Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 | | ||||| | |||| |||||| ||| |||||||| || || ||||| || | Sbjct 481215 GGTCCTTCATGTGAATGTTGAGCGACTGGGACTGGTCGATAAAGGCACCACGATCAGCAG 481274 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| | | | |||||| ||| || ||||| || ||||||||||| | |||| | Sbjct 481275 CCATCTGCACAACCGTACGCTGCGAAATCTCCCACACAGTCTTGTACAGCGCCTTGATAT 481334 Query 22344 CTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 | || || | | || | |||||| || ||||| | ||||| || || Sbjct 481335 CGTCGGGAAT-GCTGGGAATGTTCTGGATAGATCCGTTCTCCGCAATGATGCGGTTCTTC 481393 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 || | || ||||| ||| | | | || ||| | ||| | |||| || || Sbjct 481394 ATGTTGTCCGACCACAGACCCAGGTCCACCAGATCACGCAGCAGCCAAGGGTTGACAACC 481453 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 || |||||||| | || || || || |||||||||||||| ||| |||| || || | Sbjct 481454 TGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAAAGCAC 481513 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| ||||| ||||| | || || |||||||||||||| | ||| |||||| Sbjct 481514 TCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGAAGCGAG 481573 Query 22583 TTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCG 22639 || | || |||| || |||| | | ||| |||||| || ||||||||| || ||| Sbjct 481574 TTGCGCACACCGTTCTGCTTGA---TCTGCTCCTTGAGCGACGCCCAGTCCCAGAGGTCG 481630 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699 ||||| ||||| |||||| ||| | |||| | ||| || | || || Sbjct 481631 CTGGGCGTGACATT---CCACATGTCGAACTGCAGGATGCCCTGAGAAACGGGCGAACCC 481687 Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCG-CCTCCAACGCGCC 22758 || ||||| ||| | ||| | | ||||| ||| || | | || || || | Sbjct 481688 TCATACGTAGAGTAGGTACCCTCCTCCTTGGCAATTTC-CATCGAGGCCGTCAGGGCAGC 481746 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGC-GACGCTTTCGT 22814 || || || || || ||||| | |||| | | | || |||| ||| || Sbjct 481747 GTGGTAGATGGTTTCAAAGATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGAC----TCAA 481802 Query 22815 ACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTC 22874 | ||||| |||| | || ||| || || |||| ||||||||| || | ||| || || | Sbjct 481803 AAGGCATGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGAACACCAACACCAATGGGAC 481862 Query 22875 GGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 ||| || || | || || |||| |||| || || || || || | Sbjct 481863 GGTGACGCATGTTG--CTGTTGTGGGCCTCAGGCACGGGGTAGTGGTTGACGTCAATGAT 481920 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 | ||||| ||| | |||| || || | | |||||||| | Sbjct 481921 GCGGTTCAGGTTGCGCACAACAACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTACTC 481980 Query 22993 GCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCAC 23049 | | ||||| | |||||| | || | ||| || || ||||| ||||| || Sbjct 481981 GTTCTTGTTGTAGTCGACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGCACACGGCAAC 482040 Query 23050 CTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCC 23109 ||| || | |||||| | ||| || || || || ||| | || || || Sbjct 482041 CTCATCAGGCGCACAGTACTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACC 482100 Query 23110 CAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCC 23169 || || |||||||||| || || ||||| |||||||| |||||| |||| |||| Sbjct 482101 CAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCC 482160 Query 23170 CGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCAC 23229 |||||| ||| | ||| | || || ||||| |||| || | | || ||| | Sbjct 482161 TGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGAT-CGACGCGC 482219 Query 23230 GTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGT 23288 | | | ||| |||| ||||||||||| ||||| || ||||| || | ||||| || | Sbjct 482220 GGCCACGGCCCTCTTGCTCGTACTTTTCGTACAGGGCCTCAAACTCCTCGCCGTAGCAAT 482279 Query 23289 CGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGC 23348 | |||||||| || | | | || ||||| || |||| | || || || || | Sbjct 482280 CAGCCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACAC 482339 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 | |||| || ||||| || ||||| || || ||| || ||||||||||| ||||||| Sbjct 482340 GCTTCATGAAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCT 482399 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | |||||| |||||| || || | || || ||||| ||||| ||||||||||| | Sbjct 482400 CCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCA 482459 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 |||||| |||||| || || || | ||| ||||| ||||| |||||||| ||||| |||| Sbjct 482460 GGTAAATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGT 482519 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 ||||| |||| | ||||| || | || ||||||||| | ||| | ||| || | Sbjct 482520 TGTTGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGT 482579 Query 23589 TCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATA 23648 ||| || | || |||| | ||| || | || ||| || || || || || || | Sbjct 482580 ACGAGCCAGTGGCACGAATGCGGTGGACATTGAGACCGATACCACCAGCCATCTTGGAGA 482639 Query 23649 TCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGA 23708 |||| || || || ||||| ||||| ||||||||||| ||| || || | | | Sbjct 482640 TCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAA 482699 Query 23709 CCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGG 23768 ||| ||| || || |||| || || | ||||||| | || ||| || || || || Sbjct 482700 CCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGG 482759 Query 23769 CGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCT 23828 |||| || ||| | | ||||| || |||||||| || || | |||| | Sbjct 482760 CGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCTGT 482819 Query 23829 CTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGC 23888 | || || |||| || || ||||| ||||||| || || | |||||| | || Sbjct 482820 CACCCCAAATGCCGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGC 482879 Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948 ||| | || | ||| || ||||| | || || || || ||||| || | ||||| | Sbjct 482880 CGTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGA 482939 Query 23949 AGTCACGATCGTGCACTATGGCCGA 23973 ||||||| || | ||| |||||||| Sbjct 482940 AGTCACGGTCATACACAATGGCCGA 482964 >seq18 Length=564976 Score = 235 bits (260), Expect = 5e-57 Identities = 567/839 (68%), Gaps = 27/839 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||| | ||| || | || ||| Sbjct 229808 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACGGCCGAGGAGATTGATCTG 229867 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCA--AAGAATCTGA-GAGAAAT--TTTATTA 57684 || |||||||| ||| ||| | || || || || || || || | || || Sbjct 229868 TCCAAGGATCTTCACGACTGGAACAACCGCATGAACAAG--GACGAAAAGTACTTCATCT 229925 Query 57685 AACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAA 57744 ||||| |||| || ||||| || || || || ||||| |||||||| |||||||| Sbjct 229926 CGCACGTCCTGGCCTTCTTCGCTGCTTCGGACGGCATTGTCAACGAGAACTTGGTCGAGC 229985 Query 57745 GATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 | || || || || || | | ||||| | ||||| ||||| || || | | Sbjct 229986 GTTTCTCGGGTGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 230045 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || | ||| ||||| |||||||| || ||| | ||||| | Sbjct 230046 TGGAGAACATCCACTCGGAGACGTACTCGCTGCTCATCGACACCTACATCAAGGAGCCTG 230105 Query 57865 ACGAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAG 57920 | || || || ||||||||||| ||||| || || || || ||||| ||| Sbjct 230106 CCCAG---CGCAGCTACCTGTTCAACGCCATCGACACCATTCCTTGCATTCGCCGC-AAG 230161 Query 57921 GCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 || || ||| | |||| ||||| | ||| | | | || || ||| || | || | Sbjct 230162 GCCGACTGGGCTCTCAAGTGGATTTCCGACCGCGA-GTCGACCTTTGCCCAGCGTCTGGT 230220 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATATTTTGGA 58038 || || ||||||||||| ||||| ||||| |||||| ||||| || | || || ||| Sbjct 230221 GGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGC-GCTTTCGCCTCCATTTTCTGGC 230279 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 || || || || ||||||||||| ||||| ||| ||||||| |||| ||||| |||| Sbjct 230280 TGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGTGACG 230339 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 ||||||| || || || ||||| ||||| | | ||| ||| | || || | || Sbjct 230340 AGGGTCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACACCCGCCCTA-GC 230398 Query 58159 GGGATCGCATCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 || || | || ||| || |||||||| || || | || || || ||||| | || Sbjct 230399 AAGA-AGCTTGTTGAGGAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCCTGAC 230457 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 ||| || || || ||| |||| || |||||| || | ||| |||||||||| Sbjct 230458 CGAGGCTCTGCCTTGCGCCCTGCTTGGCATGAACGCCGACCTCATGAAGCAGTACATTGA 230517 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAA 58334 |||||| |||||| | || || | | || | |||| ||| ||| | | | Sbjct 230518 GTTTGTCGCCGACCGTCTGCTGGTTGCCCTTGGCAACGAGAAGGTC--TACCGCTCCACG 230575 Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || ||||| || ||| | |||||||| | || ||||| ||||| ||||| || Sbjct 230576 AACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGTAAGACCAACTTCTTCGAGAA 230634 >seq6 Length=1902109 Score = 109 bits (120), Expect = 5e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || ||||| ||| |||| ||||| | Sbjct 107425 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 107484 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||| | ||||| | ||| ||||||||| ||| | || || || Sbjct 107485 TCGGACACTATCGACAATGTCAAGTCCAAAATCCAGGACAAGGAGGGCATTCCCCCGGAT 107544 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||||||||| ||| |||| || Sbjct 107545 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 107582 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || ||||| | || || ||| |||| Sbjct 700970 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTAGAGGTCGAATCGTCG 701029 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| || | || || |||||| Sbjct 701030 GACACGATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 701089 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || ||| |||| || | || | || | |||||| Sbjct 701090 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACG-CTTT--CCGATTAC 701146 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| |||||||| || Sbjct 701147 AACATCCAGAAGGAGTCGACTCTGCATCTGGTTCT 701181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || |||||| | || || || | || Sbjct 700742 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTTGAGGTGGAGTCATCG 700801 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| || || ||||||||| ||| | || || |||||| Sbjct 700802 GATACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 700861 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | || || | ||| | ||| || ||| Sbjct 700862 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCCGACTACAAC 700921 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| |||||||| || Sbjct 700922 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCT 700953 >seq16 Length=638914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254 ||| | |||||| ||||| ||||| || || || || ||| | || || || | || || Sbjct 520745 GCACAGTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGA 520804 Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314 || |||| | ||||| | || ||||||||| ||| | || || |||||||| Sbjct 520805 CACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCA 520864 Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || ||||||||||| ||| |||| || Sbjct 520865 GCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGA 520897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766232837600