Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq18 91.5 3e-13 seq19 87.8 4e-12 >seq18 Length=564976 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| || || || || |||||||| || || ||||| |||||||||||| Sbjct 230219 GTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCGCTTTCGCCTCCATTTTCTGG 230278 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || | ||| | |||| ||||| |||| ||||| ||| | ||||| | ||| Sbjct 230279 CTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGTGAC 230338 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || ||||| || ||||||||| ||| |||| || Sbjct 230339 GAGGGTCTGCACACCGACTTTGCCTGCCTGCTCTT 230373 >seq19 Length=545716 Score = 87.8 bits (96), Expect = 4e-12 Identities = 178/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || ||||| |||||||||| || || ||| |||||||| ||||| ||| Sbjct 482615 CCGATACCACCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCC 482674 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGT 94904 || || || || | | | | | |||||||| ||||| || || | || | | || Sbjct 482675 TCGATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAGAGGACAGCTGAGCCTGGGGC-GT 482733 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 || || || || ||||| || || ||||| || | | || |||||||| | || Sbjct 482734 ACCCGCGTTGAAAAGAGTGGGCGAGGCGTGGGTGAAGAACTTGCTAGACATGAGGTTGTA 482793 Query 94965 TGTTTCAATGACAGATTTGATGTCTGAT-CCGTGAATGCCGACAGCCACACGCATAATCA 95023 || ||||| ||| | | |||| || |||||||||||| ||||||||||||| Sbjct 482794 CGTCTCAATAACACGGTCAAC-TCTGTCACCCCAAATGCCGACAGCAACACGCATAATCA 482852 Query 95024 TGTCCTGAGGGCGCTCAAC 95042 ||| ||| || ||||| || Sbjct 482853 TGTGCTGGGGACGCTCGAC 482871 Score = 84.2 bits (92), Expect = 4e-11 Identities = 110/153 (72%), Gaps = 12/153 (8%) Strand=Plus/Plus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || || ||||||| |||| |||||| ||||| | | || | ||||||||||| Sbjct 482236 CTCGTACTTTTCGTACAGGGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCA 482295 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC------ACTCTCTCCATGAA 94520 ||||| |||||||||||||| ||| | |||| ||| || | || |||||| Sbjct 482296 CTCGTTGGGGCACATCAGGGTCCAGT------CAGCGTTCTTCTCGACACGCTTCATGAA 482349 Query 94521 GAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 |||||| | | ||| | || |||||||||| Sbjct 482350 GAGATCGGGAATCCACAGCGCCAGGAAAAGATC 482382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583619628650