Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq19 150 2e-31
seq18 136 5e-27
>seq19
Length=545716
Score = 150 bits (166), Expect = 2e-31
Identities = 452/693 (65%), Gaps = 6/693 (1%)
Strand=Plus/Plus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| || || | || ||||||| | ||| || ||| | || || || ||||| ||
Sbjct 482290 AGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAA 482349
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
|||||| |||||||| || || | || ||||| | | | | ||||| || ||
Sbjct 482350 GAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCGTG 482409
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
||||| || || |||||| | | | ||| | |||||||| |||| ||| |||||
Sbjct 482410 GTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGC 482469
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | ||||| || ||||| || ||||| || | ||| | || ||||| || | ||
Sbjct 482470 AAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAACAC 482529
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
| || ||| ||||| |||||||| || |||| || || |||| || || ||| |
Sbjct 482530 ACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAGCCAGT 482589
Query 63521 GGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578
||||||||| | ||||| |||| || || || ||||| || ||||| | ||
Sbjct 482590 GGCACGAATGCGGTGGACATTGA--GACCGATACCACCAGCCATCTTGGAGATCATAGCA 482647
Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638
|| || | || || || ||||| || || || || |||||| || || ||
Sbjct 482648 CAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGAAG 482707
Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698
|| |||| || | | || ||||| || || | || || || ||||| ||
Sbjct 482708 CAAGAGGACAGCTGAGCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCGTGGGTG 482767
Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTA-TATCCCATTGATG 63757
|| | || ||| | || ||||||||||||||| | ||| | | | ||
Sbjct 482768 AAGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCTGTCA-CCCCA 482826
Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817
||| || || || |||||||| | ||||||||| || | || ||||| ||| || |
Sbjct 482827 AATGCCGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAG 482886
Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877
|||| || ||| || |||| || || || ||||| || | ||| ||||| ||
Sbjct 482887 CTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACG 482946
Query 63878 TTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910
|| || | ||| |||| | |||| |||||
Sbjct 482947 GTCATACACAATGGCCGAGTCCAGCTCTTCCTT 482979
>seq18
Length=564976
Score = 136 bits (150), Expect = 5e-27
Identities = 367/557 (66%), Gaps = 6/557 (1%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || ||| ||||||||||||||| | ||| | ||||| ||||| || ||
Sbjct 230364 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGA 230305
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|||||||| || |||||||| ||||| || ||||| ||||| | || || ||||||
Sbjct 230304 CCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAG 230245
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTCATGT 33758
|| || || || || |||||||| | || | || || | || ||| |||
Sbjct 230244 ATACCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAA 230185
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
|||||||| ||||||| |||||||| | ||||| || || || ||||| ||
Sbjct 230184 ATCCACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTG 230125
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878
|| || ||| | | | || || | || || ||||| | || ||| |
Sbjct 230124 AACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTC 230065
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
||||| || ||||| || || ||||| || |||||||| || | ||||||| |||
Sbjct 230064 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 230005
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
|| || || | || || || | || || || || || || || || || ||
Sbjct 230004 TGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCG 229945
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 34055
|| || |||| || || || || || ||||||| || || | | || |||||
Sbjct 229944 AAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAG 229885
Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115
|| | | ||| || || | ||| | || || | ||||| || || ||||| |||||
Sbjct 229884 TCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGCCTTC 229825
Query 34116 TTATACATATTCCAGAT 34132
|| ||||| | ||||||
Sbjct 229824 TTGTACATCTGCCAGAT 229808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817363818400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |