Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 >seq1 Length=4116995 Score = 123 bits (136), Expect = 2e-23 Identities = 211/302 (70%), Gaps = 8/302 (3%) Strand=Plus/Plus Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGG 21169 |||||| ||||| || | |||||| || || || |||||| | |||||||| || Sbjct 2530529 CACGTAGAACTGGGCAAACATGTGACACGGCGGCAGCGCCATCTTCTTCAGGTCCGCCGG 2530588 Query 21170 GTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATC---CAC 21226 |||||||| | ||||| |||||| | ||||| ||| |||| | || | ||| Sbjct 2530589 ATTCCACGCACTCATAATGATGCGTCTATCGTAGGGGG---TGTTCTTCAGCTTGTGCAC 2530645 Query 21227 CACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTC 21286 ||| | ||||||||| || ||||| ||| ||||| | | || | ||||| Sbjct 2530646 CACCTCTGCCAGCTGGTCGACACCCTGGCCCGTGTAGTCTGTCTGCGCATCGACATACTC 2530705 Query 21287 CGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTC 21346 || |||||||| | |||||||||||||||||| || |||| ||||||||| |||| Sbjct 2530706 TGCGCCAAAATGCCGCCACTGGAACCCGTACACGGGGCCCAAGTCGCCCTCGGCCCGGTG 2530765 Query 21347 CCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGC 21405 || | |||| ||| | || | ||||| ||||||| ||||||| || || | || Sbjct 2530766 GCCCAGGCCC-ACGCTGTTCAGGTACGCGCGCGACCCGTTGCCGTCCCATATCTTGATGC 2530824 Query 21406 CG 21407 || Sbjct 2530825 CG 2530826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775843594400