Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq18 125 5e-24 >seq18 Length=564976 Score = 125 bits (138), Expect = 5e-24 Identities = 299/445 (67%), Gaps = 8/445 (2%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||||| |||||||||| || || || || || | || || || | || || |||| Sbjct 230213 CGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCGCTTTCGCCTCCATT 230272 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 ||||||||| || ||| || ||||| || || | |||||||||||| ||||| Sbjct 230273 TTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCG 230332 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 |||||||| ||||| ||| |||||||| || |||| || ||| | | | || Sbjct 230333 CGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCT-GAACACCCG 230391 Query 22921 CCGTGTCAGGACG-ATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTT 22979 || | || || | || | | ||||| | |||||||||| |||||||| || || Sbjct 230392 CCCTAGCAAGAAGCTTGTTGAGGAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTT 230451 Query 22980 CTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTA 23039 | | ||||| || |||| ||||| ||||| ||| |||| | ||| Sbjct 230452 CCTGACCGAGGCTCTGCCTTGCGCCCTGCTTGGCATGAACGCCGACCTCATGAAGCAGTA 230511 Query 23040 CATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGT 23099 ||| ||||||| || || || ||||| | |||||| || | | ||| || || || Sbjct 230512 CATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCCCTTGGCAACGAGAAG--GTCTACCGC 230569 Query 23100 T--GCCAATCCATTTGATTTCATGGATAACAT-TAGCATTGAAGGTAAAACAAACTTCTT 23156 | | || || ||||| |||||||| ||||| | || | | ||||| || |||||||| Sbjct 230570 TCCACGAACCCCTTTGACTTCATGGAGAACATCTCGC-TGGGCGGTAAGACCAACTTCTT 230628 Query 23157 TGAACGCCGTGTGAGTGAATATCAG 23181 || ||||| |||| || ||| Sbjct 230629 CGAGAAGCGTGTTGGTGACTACCAG 230653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233469752090