Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq19 168 1e-36 seq18 149 9e-31 >seq19 Length=545716 Score = 168 bits (186), Expect = 1e-36 Identities = 463/704 (66%), Gaps = 24/704 (3%) Strand=Plus/Plus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 ||||| || |||| || ||||||| | ||| || | | | || || || ||||| Sbjct 482288 CCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATG 482347 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 |||||||| |||||||| || || | || ||||| | || | | |||||| || || Sbjct 482348 AAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCG 482407 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| || || |||||| | | | ||| | |||||||| |||| ||| ||| Sbjct 482408 TGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATG 482467 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 482468 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAC 482527 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | || ||| ||||| ||||| ||||| ||||| || || |||| || || ||| Sbjct 482528 ACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAGCCA 482587 Query 80191 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 |||||||||| | ||||| |||| || || || ||||| || ||||| | | Sbjct 482588 GTGGCACGAATGCGGTGGACATTGA--GACCGATACCACCAGCCATCTTGGAGATCATAG 482645 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 | || || | ||||| || |||||||| || || || |||||| || || | Sbjct 482646 CACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGA 482705 Query 80309 AACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAGCG 80364 | || |||| | ||| | || | | ||||| || || | || || || ||| Sbjct 482706 AGCAAGAGGACA---GCTGA-GCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCG 482761 Query 80365 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA-----GCTGATTCTAT-A 80418 || || || | || ||||| || ||||||||||||||| | | ||| | | Sbjct 482762 TGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCTGTCA 482821 Query 80419 TCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 80478 |||| ||| || || || |||||||| | ||||||||| || | || || ||| Sbjct 482822 CCCCA------AATGCCGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATC 482875 Query 80479 TTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 80538 ||| | | |||| || ||| || |||| || || || ||||| || | ||| Sbjct 482876 TTGCCGTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAG 482935 Query 80539 GAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 ||||| || || || | ||| |||||| || | ||||| Sbjct 482936 TTGAAGTCACGGTCATACACAATGGCCGAGTCCAGCTCTTCCTT 482979 >seq18 Length=564976 Score = 149 bits (164), Expect = 9e-31 Identities = 368/557 (66%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||||||||||||| | ||| || ||||||||||| || || Sbjct 230364 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGA 230305 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || |||||||| ||||| || ||||| || || | || || |||||| Sbjct 230304 CCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAG 230245 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || ||||||||||| || || | || || | | | ||| ||| Sbjct 230244 ATACCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAA 230185 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| ||||||| |||||||| | ||||| || || || ||||| || Sbjct 230184 ATCCACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTG 230125 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || || ||| | | | || || | || || ||||| | || ||| | Sbjct 230124 AACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTC 230065 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 ||||| || ||||| || || ||||| || |||||||| || | ||||||| ||| Sbjct 230064 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 230005 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || | || || || | || || || || || || ||||| || || Sbjct 230004 TGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCG 229945 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCG---TTGGGTGTTAGTTTATTCCAA 50433 || || |||| || || || || | |||||| ||| | | || ||||| Sbjct 229944 AAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAG 229885 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || | | ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 229884 TCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGCCTTC 229825 Query 50494 TTATACATATTCCAGAT 50510 || ||||| | |||||| Sbjct 229824 TTGTACATCTGCCAGAT 229808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268530649200