Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq19 156 6e-33
seq18 134 2e-26
>seq19
Length=545716
Score = 156 bits (172), Expect = 6e-33
Identities = 451/689 (65%), Gaps = 24/689 (3%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| || || || || ||||||| | ||| || | | | | || || |||||
Sbjct 482288 CCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATG 482347
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|||||||| |||||||| || || | || ||||| | || | | |||||| || ||
Sbjct 482348 AAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCG 482407
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| || || |||||| | | | ||| | |||||||| |||| ||| |||
Sbjct 482408 TGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATG 482467
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | || || || ||||| || ||||| || | ||| | || ||||| || |
Sbjct 482468 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAC 482527
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | || ||| ||||| ||||| ||||| | ||| || || |||| || || |||
Sbjct 482528 ACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAGCCA 482587
Query 72274 CTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331
|||||||||| || ||||| |||| || || || ||||| || ||||| | |
Sbjct 482588 GTGGCACGAATGCGGTGGACATTGA--GACCGATACCACCAGCCATCTTGGAGATCATAG 482645
Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391
| || || | ||||| || |||||||| || || ||| |||||| || || |
Sbjct 482646 CACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGA 482705
Query 72392 AACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAGCG 72447
| || |||| | ||| | || | | ||||| || || | || || || |||
Sbjct 482706 AGCAAGAGGACA---GCTGA-GCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCG 482761
Query 72448 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA-----GCTGATTCTAT-A 72501
|| || || | || ||||| || ||||||||||||||| | | ||| | |
Sbjct 482762 TGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCTGTCA 482821
Query 72502 TCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATC 72561
|||| || || || || |||||||| | ||| ||||| || | || || |||
Sbjct 482822 CCCCA------AATGCCGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATC 482875
Query 72562 TTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 72621
||| | | |||| || ||| || |||| || || || ||||| || | |||
Sbjct 482876 TTGCCGTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAG 482935
Query 72622 GAAAAGTCTCGTTCGTAAATAATAACCGA 72650
||||| || || || | ||| ||||
Sbjct 482936 TTGAAGTCACGGTCATACACAATGGCCGA 482964
Score = 87.8 bits (96), Expect = 2e-12
Identities = 187/276 (68%), Gaps = 5/276 (2%)
Strand=Plus/Plus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | || ||||||||||| | | || || | |||||| || |||||||||
Sbjct 481094 TCCTGGTCAACAGTGAACTGAATGGGCGCCGCAGCCGCCTGCGTACGCAGGTAGTACATG 481153
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907
|| || || ||||| || |||| || ||| ||||| || || | ||| || | |
Sbjct 481154 CCCGTCTTGAGACCCAGCTTCCAGCCCGCAAAGTGCATGCTGGTAATCTTGCCCATCG-T 481212
Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967
||| || |||||||| || | |||||| || ||||| ||||| || | || ||
Sbjct 481213 AGGGTCCTTCATGTGAATGTTGAGCGACTGGGACTGGTCGATAAAGGCACCACGATCAGC 481272
Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027
|||||| | | | ||| || | ||| ||||| | ||| || || | ||| ||
Sbjct 481273 AGCCATCTGCACAACCGTACGCTGCGAAATCTCCCACACAGTCTTGTACAGCGCCTTGAT 481332
Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCC 71060
||| || |||| | | | | ||||| || |||||
Sbjct 481333 ATCGTCGGGAATGCTGGGAATGTTCTGGATAGATCC 481368
>seq18
Length=564976
Score = 134 bits (148), Expect = 2e-26
Identities = 367/558 (66%), Gaps = 8/558 (1%)
Strand=Plus/Minus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| || || ||| |||||||||||| || | ||| | ||||||||||| || ||
Sbjct 230364 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGA 230305
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|||||||| || |||||||| ||||| || || || || || | || || ||||||
Sbjct 230304 CCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAG 230245
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCACTGTCATGT 42241
|| || || || || |||||||| | || | || || | || | | |||
Sbjct 230244 ATACCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAA 230185
Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301
|||||||| ||||||| |||||||| | ||||| || || || ||||| ||
Sbjct 230184 ATCCACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTG 230125
Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361
|| || ||| | | | || || | || || ||||| | || ||| |
Sbjct 230124 AACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTC 230065
Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421
|| || || ||||| || || ||||| || |||||||| || | |||||||| | |
Sbjct 230064 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 230005
Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481
|| || || | || || || | || || ||||| || || ||||| || ||
Sbjct 230004 TGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCG 229945
Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTATTCCA 42537
|| || |||| || || || || || ||||||||| |||| || || |||||
Sbjct 229944 AAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCC-TTGTTCATGCGGTTGTTCCA 229886
Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597
|| | | ||| || || | ||| | || || ||||||| || || || || |||||
Sbjct 229885 GTCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGCCTT 229826
Query 42598 TTTATACATATTCCAGAT 42615
|| ||||| | ||||||
Sbjct 229825 CTTGTACATCTGCCAGAT 229808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138948322800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |