Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq19 156 6e-33 seq18 134 2e-26 >seq19 Length=545716 Score = 156 bits (172), Expect = 6e-33 Identities = 451/689 (65%), Gaps = 24/689 (3%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||||| | ||| || | | | | || || ||||| Sbjct 482288 CCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATG 482347 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| |||||||| || || | || ||||| | || | | |||||| || || Sbjct 482348 AAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCG 482407 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || || |||||| | | | ||| | |||||||| |||| ||| ||| Sbjct 482408 TGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATG 482467 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 482468 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAC 482527 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | || ||| ||||| ||||| ||||| | ||| || || |||| || || ||| Sbjct 482528 ACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAGCCA 482587 Query 72274 CTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 |||||||||| || ||||| |||| || || || ||||| || ||||| | | Sbjct 482588 GTGGCACGAATGCGGTGGACATTGA--GACCGATACCACCAGCCATCTTGGAGATCATAG 482645 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | || || | ||||| || |||||||| || || ||| |||||| || || | Sbjct 482646 CACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGA 482705 Query 72392 AACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAGCG 72447 | || |||| | ||| | || | | ||||| || || | || || || ||| Sbjct 482706 AGCAAGAGGACA---GCTGA-GCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCG 482761 Query 72448 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA-----GCTGATTCTAT-A 72501 || || || | || ||||| || ||||||||||||||| | | ||| | | Sbjct 482762 TGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCTGTCA 482821 Query 72502 TCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATC 72561 |||| || || || || |||||||| | ||| ||||| || | || || ||| Sbjct 482822 CCCCA------AATGCCGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATC 482875 Query 72562 TTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 72621 ||| | | |||| || ||| || |||| || || || ||||| || | ||| Sbjct 482876 TTGCCGTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAG 482935 Query 72622 GAAAAGTCTCGTTCGTAAATAATAACCGA 72650 ||||| || || || | ||| |||| Sbjct 482936 TTGAAGTCACGGTCATACACAATGGCCGA 482964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 187/276 (68%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || ||||||||||| | | || || | |||||| || ||||||||| Sbjct 481094 TCCTGGTCAACAGTGAACTGAATGGGCGCCGCAGCCGCCTGCGTACGCAGGTAGTACATG 481153 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907 || || || ||||| || |||| || ||| ||||| || || | ||| || | | Sbjct 481154 CCCGTCTTGAGACCCAGCTTCCAGCCCGCAAAGTGCATGCTGGTAATCTTGCCCATCG-T 481212 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 ||| || |||||||| || | |||||| || ||||| ||||| || | || || Sbjct 481213 AGGGTCCTTCATGTGAATGTTGAGCGACTGGGACTGGTCGATAAAGGCACCACGATCAGC 481272 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 |||||| | | | ||| || | ||| ||||| | ||| || || | ||| || Sbjct 481273 AGCCATCTGCACAACCGTACGCTGCGAAATCTCCCACACAGTCTTGTACAGCGCCTTGAT 481332 Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCC 71060 ||| || |||| | | | | ||||| || ||||| Sbjct 481333 ATCGTCGGGAATGCTGGGAATGTTCTGGATAGATCC 481368 >seq18 Length=564976 Score = 134 bits (148), Expect = 2e-26 Identities = 367/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| |||||||||||| || | ||| | ||||||||||| || || Sbjct 230364 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGA 230305 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || |||||||| ||||| || || || || || | || || |||||| Sbjct 230304 CCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAG 230245 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCACTGTCATGT 42241 || || || || || |||||||| | || | || || | || | | ||| Sbjct 230244 ATACCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAA 230185 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| ||||||| |||||||| | ||||| || || || ||||| || Sbjct 230184 ATCCACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTG 230125 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || || ||| | | | || || | || || ||||| | || ||| | Sbjct 230124 AACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTC 230065 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || ||||| || |||||||| || | |||||||| | | Sbjct 230064 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 230005 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || | || || || | || || ||||| || || ||||| || || Sbjct 230004 TGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCG 229945 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTATTCCA 42537 || || |||| || || || || || ||||||||| |||| || || ||||| Sbjct 229944 AAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCC-TTGTTCATGCGGTTGTTCCA 229886 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | | ||| || || | ||| | || || ||||||| || || || || ||||| Sbjct 229885 GTCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGCCTT 229826 Query 42598 TTTATACATATTCCAGAT 42615 || ||||| | |||||| Sbjct 229825 CTTGTACATCTGCCAGAT 229808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138948322800